Hb_002079_030

Information

Type -
Description -
Location Contig2079: 11641-12575
Sequence    

Annotation

kegg
ID rcu:RCOM_1316510
description hypothetical protein
nr
ID XP_012075091.1
description PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
swissprot
ID Q9FVR6
description Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=2 SV=1
trembl
ID A0A067KGS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10824 PE=4 SV=1
Gene Ontology
ID GO:0009579
description nad -binding rossmann-fold superfamily protein isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21481: 11275-42437 , PASA_asmbl_21482: 10247-12533
cDNA
(Sanger)
(ID:Location)		 005_N13.ab1: 11782-42400 , 012_L17.ab1: 12491-42437 , 043_P09.ab1: 12507-42398

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002079_030 0.0 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
2 Hb_001828_040 0.0823782195 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
3 Hb_069662_010 0.0935130217 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
4 Hb_142328_010 0.1030886895 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
5 Hb_011486_040 0.1074931306 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
6 Hb_000333_080 0.1099726651 - - PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
7 Hb_004531_140 0.1122164034 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
8 Hb_000071_150 0.1160516868 - - Stearoy-ACP desaturase [Ricinus communis]
9 Hb_000347_040 0.1162517338 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
10 Hb_001898_210 0.1195509344 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
11 Hb_002184_150 0.1208005752 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_000056_130 0.1213759291 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
13 Hb_002079_050 0.1228216949 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
14 Hb_004994_050 0.1233034166 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
15 Hb_001205_300 0.1264427113 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
16 Hb_000327_110 0.1277233412 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
17 Hb_006810_030 0.128286757 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_021346_030 0.1293191386 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
19 Hb_000920_030 0.130257948 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_000608_380 0.1310448725 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002079_030 Hb_002079_030 Hb_001828_040 Hb_001828_040 Hb_002079_030--Hb_001828_040 Hb_069662_010 Hb_069662_010 Hb_002079_030--Hb_069662_010 Hb_142328_010 Hb_142328_010 Hb_002079_030--Hb_142328_010 Hb_011486_040 Hb_011486_040 Hb_002079_030--Hb_011486_040 Hb_000333_080 Hb_000333_080 Hb_002079_030--Hb_000333_080 Hb_004531_140 Hb_004531_140 Hb_002079_030--Hb_004531_140 Hb_000108_050 Hb_000108_050 Hb_001828_040--Hb_000108_050 Hb_001504_030 Hb_001504_030 Hb_001828_040--Hb_001504_030 Hb_005672_020 Hb_005672_020 Hb_001828_040--Hb_005672_020 Hb_000371_100 Hb_000371_100 Hb_001828_040--Hb_000371_100 Hb_001828_040--Hb_011486_040 Hb_069662_010--Hb_004531_140 Hb_000608_380 Hb_000608_380 Hb_069662_010--Hb_000608_380 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_069662_010--Hb_001205_300 Hb_002079_050 Hb_002079_050 Hb_142328_010--Hb_002079_050 Hb_006810_030 Hb_006810_030 Hb_142328_010--Hb_006810_030 Hb_012194_050 Hb_012194_050 Hb_142328_010--Hb_012194_050 Hb_001898_210 Hb_001898_210 Hb_142328_010--Hb_001898_210 Hb_152202_010 Hb_152202_010 Hb_142328_010--Hb_152202_010 Hb_011486_040--Hb_004531_140 Hb_011486_040--Hb_152202_010 Hb_011486_040--Hb_001898_210 Hb_001640_030 Hb_001640_030 Hb_011486_040--Hb_001640_030 Hb_002496_020 Hb_002496_020 Hb_011486_040--Hb_002496_020 Hb_000370_020 Hb_000370_020 Hb_011486_040--Hb_000370_020 Hb_000333_080--Hb_069662_010 Hb_000333_080--Hb_002184_150 Hb_004994_050 Hb_004994_050 Hb_000333_080--Hb_004994_050 Hb_000333_080--Hb_011486_040 Hb_000327_110 Hb_000327_110 Hb_000333_080--Hb_000327_110 Hb_000479_250 Hb_000479_250 Hb_004531_140--Hb_000479_250 Hb_000181_130 Hb_000181_130 Hb_004531_140--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_004531_140--Hb_009328_020 Hb_109000_020 Hb_109000_020 Hb_004531_140--Hb_109000_020 Hb_004531_140--Hb_002496_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.6572 21.4725 54.1207 72.5506 34.4391 80.0039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.3886 26.0927 23.1064 17.2096 83.6621

CAGE analysis