Hb_011486_040

Information

Type -
Description -
Location Contig11486: 22067-25151
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08610g
description POPTRDRAFT_833131; hypothetical protein
nr
ID XP_012074523.1
description PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
swissprot
ID Q9ZQR5
description Protein trichome birefringence-like 13 OS=Arabidopsis thaliana GN=TBL13 PE=2 SV=1
trembl
ID B9HN47
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08610g PE=4 SV=1
Gene Ontology
ID GO:0005794
description protein trichome birefringence-like 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04486: 22009-22580 , PASA_asmbl_04487: 23362-24466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011486_040 0.0 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
2 Hb_004531_140 0.0923854213 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
3 Hb_152202_010 0.0975684764 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
4 Hb_001898_210 0.0975702662 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
5 Hb_001640_030 0.0998669757 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
6 Hb_002496_020 0.1046655026 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000370_020 0.1059133462 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002079_030 0.1074931306 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
9 Hb_000244_180 0.1088030204 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000107_210 0.1094769656 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
11 Hb_000056_130 0.1137125698 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
12 Hb_002078_160 0.1146473743 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_000135_030 0.1152722255 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
14 Hb_004994_050 0.1174654448 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
15 Hb_005227_010 0.1175815295 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
16 Hb_001828_040 0.1177124338 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
17 Hb_000008_270 0.1180433422 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
18 Hb_009328_020 0.1180496263 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002495_080 0.1186001789 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
20 Hb_000922_300 0.1186192597 - - PREDICTED: GDSL esterase/lipase At5g62930 isoform X1 [Cucumis melo]

Gene co-expression network

sample Hb_011486_040 Hb_011486_040 Hb_004531_140 Hb_004531_140 Hb_011486_040--Hb_004531_140 Hb_152202_010 Hb_152202_010 Hb_011486_040--Hb_152202_010 Hb_001898_210 Hb_001898_210 Hb_011486_040--Hb_001898_210 Hb_001640_030 Hb_001640_030 Hb_011486_040--Hb_001640_030 Hb_002496_020 Hb_002496_020 Hb_011486_040--Hb_002496_020 Hb_000370_020 Hb_000370_020 Hb_011486_040--Hb_000370_020 Hb_000479_250 Hb_000479_250 Hb_004531_140--Hb_000479_250 Hb_069662_010 Hb_069662_010 Hb_004531_140--Hb_069662_010 Hb_000181_130 Hb_000181_130 Hb_004531_140--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_004531_140--Hb_009328_020 Hb_109000_020 Hb_109000_020 Hb_004531_140--Hb_109000_020 Hb_004531_140--Hb_002496_020 Hb_007919_100 Hb_007919_100 Hb_152202_010--Hb_007919_100 Hb_012194_050 Hb_012194_050 Hb_152202_010--Hb_012194_050 Hb_032050_040 Hb_032050_040 Hb_152202_010--Hb_032050_040 Hb_000362_150 Hb_000362_150 Hb_152202_010--Hb_000362_150 Hb_152202_010--Hb_001640_030 Hb_152202_010--Hb_001898_210 Hb_172632_040 Hb_172632_040 Hb_001898_210--Hb_172632_040 Hb_001898_210--Hb_009328_020 Hb_001898_210--Hb_000479_250 Hb_001279_030 Hb_001279_030 Hb_001898_210--Hb_001279_030 Hb_000022_020 Hb_000022_020 Hb_001898_210--Hb_000022_020 Hb_002631_070 Hb_002631_070 Hb_001640_030--Hb_002631_070 Hb_003994_280 Hb_003994_280 Hb_001640_030--Hb_003994_280 Hb_001640_030--Hb_000362_150 Hb_004680_120 Hb_004680_120 Hb_001640_030--Hb_004680_120 Hb_000050_190 Hb_000050_190 Hb_001640_030--Hb_000050_190 Hb_004191_020 Hb_004191_020 Hb_002496_020--Hb_004191_020 Hb_002496_020--Hb_000479_250 Hb_001369_750 Hb_001369_750 Hb_002496_020--Hb_001369_750 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_001584_200 Hb_001584_200 Hb_002496_020--Hb_001584_200 Hb_000359_310 Hb_000359_310 Hb_000370_020--Hb_000359_310 Hb_005023_010 Hb_005023_010 Hb_000370_020--Hb_005023_010 Hb_012395_170 Hb_012395_170 Hb_000370_020--Hb_012395_170 Hb_000256_150 Hb_000256_150 Hb_000370_020--Hb_000256_150 Hb_027380_220 Hb_027380_220 Hb_000370_020--Hb_027380_220 Hb_002495_080 Hb_002495_080 Hb_000370_020--Hb_002495_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86264 0.856931 2.14819 4.04964 2.27808 2.99246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93064 1.78161 1.85404 1.28529 4.1266

CAGE analysis