Hb_004191_020

Information

Type -
Description -
Location Contig4191: 39940-51859
Sequence    

Annotation

kegg
ID tcc:TCM_019851
description O-acetylserine lyase B isoform 1
nr
ID XP_012075412.1
description PREDICTED: cysteine synthase [Jatropha curcas]
swissprot
ID O81155
description Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KFZ5
description Cysteine synthase OS=Jatropha curcas GN=JCGZ_10685 PE=3 SV=1
Gene Ontology
ID GO:0004124
description cysteine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41405: 40036-51996 , PASA_asmbl_41406: 50146-50541
cDNA
(Sanger)
(ID:Location)		 048_E22.ab1: 40059-43858

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004191_020 0.0 - - PREDICTED: cysteine synthase [Jatropha curcas]
2 Hb_002496_020 0.0775312763 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000335_030 0.0779777267 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
4 Hb_006478_020 0.0871375465 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_001971_010 0.0886652772 - - F23N19.4 [Arabidopsis thaliana]
6 Hb_008790_030 0.0918807104 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
7 Hb_024128_020 0.0925163806 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
8 Hb_001366_180 0.0936144282 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
9 Hb_005144_050 0.0939083142 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
10 Hb_000329_210 0.0970147088 - - Golgi snare 12 isoform 1 [Theobroma cacao]
11 Hb_011021_020 0.0978918561 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
12 Hb_010583_020 0.0990293648 - - PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
13 Hb_001711_020 0.1007450869 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
14 Hb_006274_030 0.1015203112 - - F-box and wd40 domain protein, putative [Ricinus communis]
15 Hb_011716_130 0.1017187831 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
16 Hb_010883_040 0.1026905374 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
17 Hb_000479_250 0.1039346605 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
18 Hb_005847_060 0.1051243719 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
19 Hb_007811_030 0.1052275688 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000599_250 0.1067524646 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]

Gene co-expression network

sample Hb_004191_020 Hb_004191_020 Hb_002496_020 Hb_002496_020 Hb_004191_020--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_004191_020--Hb_000335_030 Hb_006478_020 Hb_006478_020 Hb_004191_020--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_004191_020--Hb_001971_010 Hb_008790_030 Hb_008790_030 Hb_004191_020--Hb_008790_030 Hb_024128_020 Hb_024128_020 Hb_004191_020--Hb_024128_020 Hb_000479_250 Hb_000479_250 Hb_002496_020--Hb_000479_250 Hb_004531_140 Hb_004531_140 Hb_002496_020--Hb_004531_140 Hb_001369_750 Hb_001369_750 Hb_002496_020--Hb_001369_750 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_001584_200 Hb_001584_200 Hb_002496_020--Hb_001584_200 Hb_001341_070 Hb_001341_070 Hb_000335_030--Hb_001341_070 Hb_029510_050 Hb_029510_050 Hb_000335_030--Hb_029510_050 Hb_010883_040 Hb_010883_040 Hb_000335_030--Hb_010883_040 Hb_000335_030--Hb_006478_020 Hb_000676_250 Hb_000676_250 Hb_000335_030--Hb_000676_250 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_001971_010--Hb_000172_290 Hb_000415_040 Hb_000415_040 Hb_008790_030--Hb_000415_040 Hb_000331_200 Hb_000331_200 Hb_008790_030--Hb_000331_200 Hb_019762_020 Hb_019762_020 Hb_008790_030--Hb_019762_020 Hb_000173_290 Hb_000173_290 Hb_008790_030--Hb_000173_290 Hb_008790_030--Hb_024128_020 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_005144_050 Hb_005144_050 Hb_024128_020--Hb_005144_050 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_024128_020--Hb_001366_180 Hb_024128_020--Hb_006478_020 Hb_024128_020--Hb_029510_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.7186 7.73633 23.5934 35.6195 21.0542 32.6511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9823 29.4577 36.9056 16.9092 43.7466

CAGE analysis