Hb_000415_040

Information

Type -
Description -
Location Contig415: 91846-103891
Sequence    

Annotation

kegg
ID rcu:RCOM_0050890
description Epsin-2, putative
nr
ID XP_012066239.1
description PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
swissprot
ID Q93YP4
description Clathrin interactor EPSIN 3 OS=Arabidopsis thaliana GN=EPSIN3 PE=2 SV=1
trembl
ID A0A067LFJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23811 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41087: 91477-103643 , PASA_asmbl_41089: 99657-100571 , PASA_asmbl_41090: 96145-96589 , PASA_asmbl_41091: 103660-103784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000415_040 0.0 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
2 Hb_008790_030 0.0908318417 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
3 Hb_000170_070 0.1011414334 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
4 Hb_001546_060 0.1089388663 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
5 Hb_000179_220 0.10928162 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
6 Hb_001369_750 0.110444079 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
7 Hb_005504_060 0.1113069971 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
8 Hb_000441_200 0.1123050609 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_001024_020 0.1136770054 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
10 Hb_001975_140 0.1149951332 - - PREDICTED: urease accessory protein F [Jatropha curcas]
11 Hb_005144_050 0.1158975309 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
12 Hb_027380_220 0.1167836927 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
13 Hb_001696_010 0.1168096205 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
14 Hb_009658_020 0.1168640156 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
15 Hb_007672_060 0.1174357571 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
16 Hb_029510_050 0.1187183239 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
17 Hb_000300_050 0.1188173352 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000173_290 0.1200989106 - - guanylate kinase, putative [Ricinus communis]
19 Hb_024128_020 0.1228880713 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
20 Hb_001366_180 0.1245399967 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000415_040 Hb_000415_040 Hb_008790_030 Hb_008790_030 Hb_000415_040--Hb_008790_030 Hb_000170_070 Hb_000170_070 Hb_000415_040--Hb_000170_070 Hb_001546_060 Hb_001546_060 Hb_000415_040--Hb_001546_060 Hb_000179_220 Hb_000179_220 Hb_000415_040--Hb_000179_220 Hb_001369_750 Hb_001369_750 Hb_000415_040--Hb_001369_750 Hb_005504_060 Hb_005504_060 Hb_000415_040--Hb_005504_060 Hb_004191_020 Hb_004191_020 Hb_008790_030--Hb_004191_020 Hb_000331_200 Hb_000331_200 Hb_008790_030--Hb_000331_200 Hb_019762_020 Hb_019762_020 Hb_008790_030--Hb_019762_020 Hb_000173_290 Hb_000173_290 Hb_008790_030--Hb_000173_290 Hb_024128_020 Hb_024128_020 Hb_008790_030--Hb_024128_020 Hb_000441_200 Hb_000441_200 Hb_000170_070--Hb_000441_200 Hb_012035_050 Hb_012035_050 Hb_000170_070--Hb_012035_050 Hb_000003_590 Hb_000003_590 Hb_000170_070--Hb_000003_590 Hb_000025_640 Hb_000025_640 Hb_000170_070--Hb_000025_640 Hb_000170_070--Hb_005504_060 Hb_008453_030 Hb_008453_030 Hb_000170_070--Hb_008453_030 Hb_001049_110 Hb_001049_110 Hb_001546_060--Hb_001049_110 Hb_103118_010 Hb_103118_010 Hb_001546_060--Hb_103118_010 Hb_007317_140 Hb_007317_140 Hb_001546_060--Hb_007317_140 Hb_000061_210 Hb_000061_210 Hb_001546_060--Hb_000061_210 Hb_005253_030 Hb_005253_030 Hb_001546_060--Hb_005253_030 Hb_005023_010 Hb_005023_010 Hb_000179_220--Hb_005023_010 Hb_001225_080 Hb_001225_080 Hb_000179_220--Hb_001225_080 Hb_000179_220--Hb_005504_060 Hb_000300_630 Hb_000300_630 Hb_000179_220--Hb_000300_630 Hb_004117_110 Hb_004117_110 Hb_000179_220--Hb_004117_110 Hb_000479_250 Hb_000479_250 Hb_001369_750--Hb_000479_250 Hb_000261_060 Hb_000261_060 Hb_001369_750--Hb_000261_060 Hb_002276_020 Hb_002276_020 Hb_001369_750--Hb_002276_020 Hb_001366_180 Hb_001366_180 Hb_001369_750--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_000621_010 Hb_000621_010 Hb_005504_060--Hb_000621_010 Hb_007672_060 Hb_007672_060 Hb_005504_060--Hb_007672_060 Hb_054865_150 Hb_054865_150 Hb_005504_060--Hb_054865_150 Hb_005054_090 Hb_005054_090 Hb_005504_060--Hb_005054_090 Hb_002027_290 Hb_002027_290 Hb_005504_060--Hb_002027_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3755 21.139 16.2848 55.3584 60.2659 37.5794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.7272 44.2146 44.1688 25.1706 58.5078

CAGE analysis