Hb_000179_220

Information

Type -
Description -
Location Contig179: 210239-216136
Sequence    

Annotation

kegg
ID rcu:RCOM_1046270
description hypothetical protein
nr
ID XP_012076997.1
description PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
swissprot
ID O94673
description Uncharacterized membrane protein C776.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.05 PE=4 SV=2
trembl
ID A0A067KPY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17293: 212759-216298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_220 0.0 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
2 Hb_005023_010 0.0979100874 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
3 Hb_001225_080 0.1001475212 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
4 Hb_005504_060 0.108306404 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
5 Hb_000415_040 0.10928162 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
6 Hb_000300_630 0.111631 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
7 Hb_004117_110 0.1137263251 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
8 Hb_030736_020 0.1144297934 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001882_050 0.1156172808 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
10 Hb_000003_590 0.1173632079 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
11 Hb_007672_060 0.1180908561 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
12 Hb_001427_160 0.118704304 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_000141_080 0.1196340244 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
14 Hb_000670_050 0.1196819846 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
15 Hb_004627_040 0.1201840853 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
16 Hb_000116_450 0.1206125491 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
17 Hb_002110_190 0.1207113846 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
18 Hb_000441_140 0.1213115315 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
19 Hb_001018_130 0.1218336897 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
20 Hb_000161_040 0.1229279972 - - PREDICTED: protein EI24 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000179_220 Hb_000179_220 Hb_005023_010 Hb_005023_010 Hb_000179_220--Hb_005023_010 Hb_001225_080 Hb_001225_080 Hb_000179_220--Hb_001225_080 Hb_005504_060 Hb_005504_060 Hb_000179_220--Hb_005504_060 Hb_000415_040 Hb_000415_040 Hb_000179_220--Hb_000415_040 Hb_000300_630 Hb_000300_630 Hb_000179_220--Hb_000300_630 Hb_004117_110 Hb_004117_110 Hb_000179_220--Hb_004117_110 Hb_090051_030 Hb_090051_030 Hb_005023_010--Hb_090051_030 Hb_001018_130 Hb_001018_130 Hb_005023_010--Hb_001018_130 Hb_005023_010--Hb_000300_630 Hb_001018_110 Hb_001018_110 Hb_005023_010--Hb_001018_110 Hb_001633_130 Hb_001633_130 Hb_005023_010--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_005023_010--Hb_000146_050 Hb_001703_060 Hb_001703_060 Hb_001225_080--Hb_001703_060 Hb_007101_300 Hb_007101_300 Hb_001225_080--Hb_007101_300 Hb_000030_030 Hb_000030_030 Hb_001225_080--Hb_000030_030 Hb_000406_080 Hb_000406_080 Hb_001225_080--Hb_000406_080 Hb_000331_200 Hb_000331_200 Hb_001225_080--Hb_000331_200 Hb_000032_380 Hb_000032_380 Hb_001225_080--Hb_000032_380 Hb_000621_010 Hb_000621_010 Hb_005504_060--Hb_000621_010 Hb_007672_060 Hb_007672_060 Hb_005504_060--Hb_007672_060 Hb_054865_150 Hb_054865_150 Hb_005504_060--Hb_054865_150 Hb_005054_090 Hb_005054_090 Hb_005504_060--Hb_005054_090 Hb_000170_070 Hb_000170_070 Hb_005504_060--Hb_000170_070 Hb_002027_290 Hb_002027_290 Hb_005504_060--Hb_002027_290 Hb_008790_030 Hb_008790_030 Hb_000415_040--Hb_008790_030 Hb_000415_040--Hb_000170_070 Hb_001546_060 Hb_001546_060 Hb_000415_040--Hb_001546_060 Hb_001369_750 Hb_001369_750 Hb_000415_040--Hb_001369_750 Hb_000415_040--Hb_005504_060 Hb_006618_120 Hb_006618_120 Hb_000300_630--Hb_006618_120 Hb_004627_040 Hb_004627_040 Hb_000300_630--Hb_004627_040 Hb_000300_630--Hb_001018_110 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_000300_630--Hb_001633_130 Hb_000028_370 Hb_000028_370 Hb_004117_110--Hb_000028_370 Hb_013738_020 Hb_013738_020 Hb_004117_110--Hb_013738_020 Hb_000215_320 Hb_000215_320 Hb_004117_110--Hb_000215_320 Hb_002026_210 Hb_002026_210 Hb_004117_110--Hb_002026_210 Hb_168978_010 Hb_168978_010 Hb_004117_110--Hb_168978_010 Hb_002110_080 Hb_002110_080 Hb_004117_110--Hb_002110_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04195 6.2293 3.3009 12.5883 8.29613 7.48497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0172 7.22566 6.07582 3.99622 6.42079

CAGE analysis