Hb_004680_120

Information

Type -
Description -
Location Contig4680: 242870-250320
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08130g
description POPTRDRAFT_735401; hypothetical protein
nr
ID XP_012074855.1
description PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
swissprot
ID Q8VZC0
description UDP-glucuronic acid decarboxylase 1 OS=Arabidopsis thaliana GN=UXS1 PE=1 SV=1
trembl
ID A0A067KKP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09011 PE=4 SV=1
Gene Ontology
ID GO:0003824
description udp-glucuronate decarboxylase protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44172: 242847-250420 , PASA_asmbl_44173: 248215-250420
cDNA
(Sanger)
(ID:Location)		 001_I13.ab1: 249443-250191 , 002_J17.ab1: 249442-250191 , 005_N02.ab1: 249483-250420 , 022_D01.ab1: 250092-250417

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004680_120 0.0 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
2 Hb_001498_010 0.0773408265 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
3 Hb_011228_010 0.0809260507 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_001279_030 0.082096299 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
5 Hb_003912_030 0.0861716269 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
6 Hb_001005_050 0.0910427736 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
7 Hb_003544_140 0.0936174583 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
8 Hb_001640_030 0.0953130345 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
9 Hb_002667_050 0.0989180501 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
10 Hb_006501_090 0.0994561598 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
11 Hb_000853_210 0.0996615999 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
12 Hb_002055_040 0.1032878837 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
13 Hb_003994_280 0.1041285806 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
14 Hb_000264_350 0.1042952861 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
15 Hb_000086_440 0.1045006514 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
16 Hb_002099_080 0.1051724513 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
17 Hb_006660_010 0.1051967342 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
18 Hb_000362_150 0.1054007398 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
19 Hb_000181_240 0.1056217634 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
20 Hb_000004_030 0.1056459317 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]

Gene co-expression network

sample Hb_004680_120 Hb_004680_120 Hb_001498_010 Hb_001498_010 Hb_004680_120--Hb_001498_010 Hb_011228_010 Hb_011228_010 Hb_004680_120--Hb_011228_010 Hb_001279_030 Hb_001279_030 Hb_004680_120--Hb_001279_030 Hb_003912_030 Hb_003912_030 Hb_004680_120--Hb_003912_030 Hb_001005_050 Hb_001005_050 Hb_004680_120--Hb_001005_050 Hb_003544_140 Hb_003544_140 Hb_004680_120--Hb_003544_140 Hb_000039_150 Hb_000039_150 Hb_001498_010--Hb_000039_150 Hb_000037_190 Hb_000037_190 Hb_001498_010--Hb_000037_190 Hb_003203_030 Hb_003203_030 Hb_001498_010--Hb_003203_030 Hb_002055_040 Hb_002055_040 Hb_001498_010--Hb_002055_040 Hb_004003_040 Hb_004003_040 Hb_001498_010--Hb_004003_040 Hb_011228_010--Hb_001279_030 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_011228_010--Hb_002055_040 Hb_005291_050 Hb_005291_050 Hb_001279_030--Hb_005291_050 Hb_006501_090 Hb_006501_090 Hb_001279_030--Hb_006501_090 Hb_000181_240 Hb_000181_240 Hb_001279_030--Hb_000181_240 Hb_001279_030--Hb_000039_150 Hb_015807_050 Hb_015807_050 Hb_001279_030--Hb_015807_050 Hb_000853_210 Hb_000853_210 Hb_003912_030--Hb_000853_210 Hb_000086_440 Hb_000086_440 Hb_003912_030--Hb_000086_440 Hb_000667_030 Hb_000667_030 Hb_003912_030--Hb_000667_030 Hb_004117_100 Hb_004117_100 Hb_003912_030--Hb_004117_100 Hb_034432_030 Hb_034432_030 Hb_003912_030--Hb_034432_030 Hb_002667_050 Hb_002667_050 Hb_001005_050--Hb_002667_050 Hb_001005_050--Hb_003544_140 Hb_007922_020 Hb_007922_020 Hb_001005_050--Hb_007922_020 Hb_001005_050--Hb_011228_010 Hb_000261_060 Hb_000261_060 Hb_001005_050--Hb_000261_060 Hb_012760_100 Hb_012760_100 Hb_003544_140--Hb_012760_100 Hb_003544_140--Hb_011228_010 Hb_007994_010 Hb_007994_010 Hb_003544_140--Hb_007994_010 Hb_004182_050 Hb_004182_050 Hb_003544_140--Hb_004182_050 Hb_002849_100 Hb_002849_100 Hb_003544_140--Hb_002849_100 Hb_000035_170 Hb_000035_170 Hb_003544_140--Hb_000035_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3186 13.2481 14.9767 23.6132 26.5989 28.6915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.968 8.28095 27.549 16.9284 34.6197

CAGE analysis