Hb_004117_100

Information

Type -
Description -
Location Contig4117: 70913-78007
Sequence    

Annotation

kegg
ID rcu:RCOM_1057980
description Vacuolar sorting receptor 1 precursor, putative
nr
ID XP_002528694.1
description Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
swissprot
ID P93026
description Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2
trembl
ID B9SRT1
description Vacuolar sorting receptor 1, putative OS=Ricinus communis GN=RCOM_1057980 PE=4 SV=1
Gene Ontology
ID GO:0005509
description vacuolar-sorting receptor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40748: 71029-77965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_100 0.0 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
2 Hb_000313_260 0.0873540069 - - auxin:hydrogen symporter, putative [Ricinus communis]
3 Hb_000463_140 0.0899046835 - - Poly(rC)-binding protein, putative [Ricinus communis]
4 Hb_034432_030 0.0931733938 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
5 Hb_000853_210 0.0973366773 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
6 Hb_005488_150 0.1009774199 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_048476_170 0.1010504584 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
8 Hb_001379_110 0.1014234568 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
9 Hb_003988_010 0.1023173889 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
10 Hb_000768_190 0.105203352 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
11 Hb_000796_040 0.1061307976 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_003912_030 0.1078866939 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
13 Hb_011310_160 0.1084473001 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
14 Hb_001440_040 0.1092644905 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
15 Hb_001322_170 0.1098102754 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
16 Hb_000116_500 0.1099161481 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
17 Hb_000739_310 0.1133488044 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
18 Hb_146224_010 0.1134973606 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000363_460 0.1150910661 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_064903_010 0.1155909666 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]

Gene co-expression network

sample Hb_004117_100 Hb_004117_100 Hb_000313_260 Hb_000313_260 Hb_004117_100--Hb_000313_260 Hb_000463_140 Hb_000463_140 Hb_004117_100--Hb_000463_140 Hb_034432_030 Hb_034432_030 Hb_004117_100--Hb_034432_030 Hb_000853_210 Hb_000853_210 Hb_004117_100--Hb_000853_210 Hb_005488_150 Hb_005488_150 Hb_004117_100--Hb_005488_150 Hb_048476_170 Hb_048476_170 Hb_004117_100--Hb_048476_170 Hb_002276_170 Hb_002276_170 Hb_000313_260--Hb_002276_170 Hb_000116_500 Hb_000116_500 Hb_000313_260--Hb_000116_500 Hb_017700_010 Hb_017700_010 Hb_000313_260--Hb_017700_010 Hb_000313_260--Hb_034432_030 Hb_001047_220 Hb_001047_220 Hb_000313_260--Hb_001047_220 Hb_001379_110 Hb_001379_110 Hb_000313_260--Hb_001379_110 Hb_000041_280 Hb_000041_280 Hb_000463_140--Hb_000041_280 Hb_000514_060 Hb_000514_060 Hb_000463_140--Hb_000514_060 Hb_001243_040 Hb_001243_040 Hb_000463_140--Hb_001243_040 Hb_000574_440 Hb_000574_440 Hb_000463_140--Hb_000574_440 Hb_002025_020 Hb_002025_020 Hb_000463_140--Hb_002025_020 Hb_034432_030--Hb_001379_110 Hb_034432_030--Hb_001047_220 Hb_000544_010 Hb_000544_010 Hb_034432_030--Hb_000544_010 Hb_011618_080 Hb_011618_080 Hb_034432_030--Hb_011618_080 Hb_000975_040 Hb_000975_040 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080 Hb_000796_040 Hb_000796_040 Hb_000853_210--Hb_000796_040 Hb_000009_600 Hb_000009_600 Hb_000853_210--Hb_000009_600 Hb_000853_210--Hb_034432_030 Hb_004228_010 Hb_004228_010 Hb_000853_210--Hb_004228_010 Hb_007904_030 Hb_007904_030 Hb_000853_210--Hb_007904_030 Hb_004306_080 Hb_004306_080 Hb_000853_210--Hb_004306_080 Hb_148909_030 Hb_148909_030 Hb_005488_150--Hb_148909_030 Hb_000183_020 Hb_000183_020 Hb_005488_150--Hb_000183_020 Hb_000069_320 Hb_000069_320 Hb_005488_150--Hb_000069_320 Hb_004453_110 Hb_004453_110 Hb_005488_150--Hb_004453_110 Hb_009503_030 Hb_009503_030 Hb_005488_150--Hb_009503_030 Hb_000429_220 Hb_000429_220 Hb_005488_150--Hb_000429_220 Hb_002890_180 Hb_002890_180 Hb_048476_170--Hb_002890_180 Hb_001136_090 Hb_001136_090 Hb_048476_170--Hb_001136_090 Hb_048476_170--Hb_000463_140 Hb_000832_130 Hb_000832_130 Hb_048476_170--Hb_000832_130 Hb_007304_110 Hb_007304_110 Hb_048476_170--Hb_007304_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.3438 74.8962 81.9143 73.987 218.723 135.975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.1375 40.1195 135.832 100.741 119.668

CAGE analysis