Hb_000041_280

Information

Type -
Description -
Location Contig41: 391312-400367
Sequence    

Annotation

kegg
ID rcu:RCOM_1454120
description protein arginine n-methyltransferase, putative (EC:2.1.1.125)
nr
ID XP_012068576.1
description PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
swissprot
ID Q08A71
description Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1
trembl
ID A0A067L7J2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24474 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable protein arginine n-methyltransferase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40510: 391325-391523 , PASA_asmbl_40511: 391621-400275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_280 0.0 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
2 Hb_001136_090 0.0737912695 - - Protein PNS1, putative [Ricinus communis]
3 Hb_001493_030 0.0788976973 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
4 Hb_000463_140 0.0802532247 - - Poly(rC)-binding protein, putative [Ricinus communis]
5 Hb_009627_010 0.0822509217 - - Protein dom-3, putative [Ricinus communis]
6 Hb_003052_150 0.0831991789 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
7 Hb_000574_440 0.0863829746 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
8 Hb_004209_020 0.0870462801 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
9 Hb_002025_020 0.0874418479 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
10 Hb_010710_080 0.0879240994 - - -
11 Hb_000618_030 0.0886208439 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
12 Hb_002909_050 0.0890206129 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006449_050 0.0895973893 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
14 Hb_000347_070 0.0908706241 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010381_060 0.0921027294 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
16 Hb_002367_130 0.0935200579 - - UNC-50 family protein isoform 1 [Theobroma cacao]
17 Hb_000879_200 0.0948035228 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
18 Hb_000029_130 0.0955786014 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
19 Hb_009411_010 0.0962688534 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
20 Hb_000320_200 0.0962770872 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000041_280 Hb_000041_280 Hb_001136_090 Hb_001136_090 Hb_000041_280--Hb_001136_090 Hb_001493_030 Hb_001493_030 Hb_000041_280--Hb_001493_030 Hb_000463_140 Hb_000463_140 Hb_000041_280--Hb_000463_140 Hb_009627_010 Hb_009627_010 Hb_000041_280--Hb_009627_010 Hb_003052_150 Hb_003052_150 Hb_000041_280--Hb_003052_150 Hb_000574_440 Hb_000574_440 Hb_000041_280--Hb_000574_440 Hb_001136_100 Hb_001136_100 Hb_001136_090--Hb_001136_100 Hb_002367_130 Hb_002367_130 Hb_001136_090--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001136_090--Hb_000072_350 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030 Hb_000514_060 Hb_000514_060 Hb_000463_140--Hb_000514_060 Hb_004117_100 Hb_004117_100 Hb_000463_140--Hb_004117_100 Hb_001243_040 Hb_001243_040 Hb_000463_140--Hb_001243_040 Hb_000463_140--Hb_000574_440 Hb_002025_020 Hb_002025_020 Hb_000463_140--Hb_002025_020 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_003052_150--Hb_009627_010 Hb_003052_150--Hb_010381_060 Hb_028487_110 Hb_028487_110 Hb_003052_150--Hb_028487_110 Hb_003544_100 Hb_003544_100 Hb_003052_150--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_003052_150--Hb_009411_010 Hb_001638_250 Hb_001638_250 Hb_003052_150--Hb_001638_250 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55502 4.37849 4.55551 2.29786 11.2075 7.88538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.93718 4.01355 6.45306 5.70035 4.35351

CAGE analysis