Hb_000463_140

Information

Type -
Description -
Location Contig463: 127354-135047
Sequence    

Annotation

kegg
ID rcu:RCOM_1705180
description Poly(rC)-binding protein, putative
nr
ID XP_002518248.1
description Poly(rC)-binding protein, putative [Ricinus communis]
swissprot
ID Q9SZH4
description RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP PE=2 SV=1
trembl
ID B9RWX9
description Poly(RC)-binding protein, putative OS=Ricinus communis GN=RCOM_1705180 PE=4 SV=1
Gene Ontology
ID GO:0003723
description poly -binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43844: 127370-134994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000463_140 0.0 - - Poly(rC)-binding protein, putative [Ricinus communis]
2 Hb_000041_280 0.0802532247 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
3 Hb_000514_060 0.0807977366 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
4 Hb_004117_100 0.0899046835 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
5 Hb_001243_040 0.0983535791 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
6 Hb_000574_440 0.0995529905 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
7 Hb_002025_020 0.1017630148 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
8 Hb_015884_030 0.1027093826 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
9 Hb_048476_170 0.1062882794 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
10 Hb_000739_310 0.107529539 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
11 Hb_007304_110 0.1092753972 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
12 Hb_000335_020 0.1099020769 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_009503_030 0.1100049988 - - protein dimerization, putative [Ricinus communis]
14 Hb_126643_010 0.1101852172 - - Protein transport protein Sec24C, putative [Ricinus communis]
15 Hb_002255_070 0.1103066893 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
16 Hb_001379_110 0.110488427 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
17 Hb_004155_010 0.1109478455 - - PREDICTED: la protein 1 [Jatropha curcas]
18 Hb_028089_010 0.1109549832 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
19 Hb_000796_030 0.1124362208 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
20 Hb_002909_050 0.112661503 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000463_140 Hb_000463_140 Hb_000041_280 Hb_000041_280 Hb_000463_140--Hb_000041_280 Hb_000514_060 Hb_000514_060 Hb_000463_140--Hb_000514_060 Hb_004117_100 Hb_004117_100 Hb_000463_140--Hb_004117_100 Hb_001243_040 Hb_001243_040 Hb_000463_140--Hb_001243_040 Hb_000574_440 Hb_000574_440 Hb_000463_140--Hb_000574_440 Hb_002025_020 Hb_002025_020 Hb_000463_140--Hb_002025_020 Hb_001136_090 Hb_001136_090 Hb_000041_280--Hb_001136_090 Hb_001493_030 Hb_001493_030 Hb_000041_280--Hb_001493_030 Hb_009627_010 Hb_009627_010 Hb_000041_280--Hb_009627_010 Hb_003052_150 Hb_003052_150 Hb_000041_280--Hb_003052_150 Hb_000041_280--Hb_000574_440 Hb_009411_010 Hb_009411_010 Hb_000514_060--Hb_009411_010 Hb_007757_110 Hb_007757_110 Hb_000514_060--Hb_007757_110 Hb_001797_050 Hb_001797_050 Hb_000514_060--Hb_001797_050 Hb_000796_030 Hb_000796_030 Hb_000514_060--Hb_000796_030 Hb_002232_030 Hb_002232_030 Hb_000514_060--Hb_002232_030 Hb_001930_010 Hb_001930_010 Hb_000514_060--Hb_001930_010 Hb_000313_260 Hb_000313_260 Hb_004117_100--Hb_000313_260 Hb_034432_030 Hb_034432_030 Hb_004117_100--Hb_034432_030 Hb_000853_210 Hb_000853_210 Hb_004117_100--Hb_000853_210 Hb_005488_150 Hb_005488_150 Hb_004117_100--Hb_005488_150 Hb_048476_170 Hb_048476_170 Hb_004117_100--Hb_048476_170 Hb_114310_090 Hb_114310_090 Hb_001243_040--Hb_114310_090 Hb_018133_040 Hb_018133_040 Hb_001243_040--Hb_018133_040 Hb_000731_270 Hb_000731_270 Hb_001243_040--Hb_000731_270 Hb_001632_040 Hb_001632_040 Hb_001243_040--Hb_001632_040 Hb_001696_010 Hb_001696_010 Hb_001243_040--Hb_001696_010 Hb_001322_170 Hb_001322_170 Hb_001243_040--Hb_001322_170 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_000347_070 Hb_000347_070 Hb_002025_020--Hb_000347_070 Hb_009545_100 Hb_009545_100 Hb_002025_020--Hb_009545_100 Hb_003158_010 Hb_003158_010 Hb_002025_020--Hb_003158_010 Hb_002835_370 Hb_002835_370 Hb_002025_020--Hb_002835_370 Hb_004221_020 Hb_004221_020 Hb_002025_020--Hb_004221_020 Hb_000780_230 Hb_000780_230 Hb_002025_020--Hb_000780_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.1774 40.5671 40.4288 19.0904 84.0572 59.4006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6554 26.4389 76.5304 43.6541 43.9919

CAGE analysis