Hb_001136_100

Information

Type -
Description -
Location Contig1136: 108065-109481
Sequence    

Annotation

kegg
ID mtr:MTR_085s0013
description hypothetical protein
nr
ID XP_003637409.1
description hypothetical protein MTR_085s0013 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7ZZA9
description Putative uncharacterized protein OS=Medicago truncatula GN=MTR_085s0013 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ctl-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_100 0.0 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
2 Hb_001136_090 0.0878477087 - - Protein PNS1, putative [Ricinus communis]
3 Hb_002367_130 0.0887825962 - - UNC-50 family protein isoform 1 [Theobroma cacao]
4 Hb_012132_030 0.0899055016 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
5 Hb_003001_150 0.0942112565 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_007304_110 0.1021805668 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
7 Hb_000207_310 0.1035884532 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
8 Hb_002872_020 0.1066864586 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000363_460 0.107597881 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000041_280 0.1083835969 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
11 Hb_000116_180 0.1110092452 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
12 Hb_000946_120 0.1115004212 - - DNA binding protein, putative [Ricinus communis]
13 Hb_008143_030 0.113235439 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
14 Hb_108216_040 0.1140523606 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
15 Hb_002890_020 0.1146917238 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
16 Hb_001369_420 0.1159476207 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
17 Hb_002876_110 0.116733615 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000640_230 0.117115317 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002681_070 0.1186256364 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
20 Hb_000320_200 0.1197910503 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001136_100 Hb_001136_100 Hb_001136_090 Hb_001136_090 Hb_001136_100--Hb_001136_090 Hb_002367_130 Hb_002367_130 Hb_001136_100--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_100--Hb_012132_030 Hb_003001_150 Hb_003001_150 Hb_001136_100--Hb_003001_150 Hb_007304_110 Hb_007304_110 Hb_001136_100--Hb_007304_110 Hb_000207_310 Hb_000207_310 Hb_001136_100--Hb_000207_310 Hb_000041_280 Hb_000041_280 Hb_001136_090--Hb_000041_280 Hb_001136_090--Hb_002367_130 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001136_090--Hb_000072_350 Hb_000116_180 Hb_000116_180 Hb_002367_130--Hb_000116_180 Hb_001828_160 Hb_001828_160 Hb_002367_130--Hb_001828_160 Hb_002367_130--Hb_000207_310 Hb_003018_130 Hb_003018_130 Hb_002367_130--Hb_003018_130 Hb_021422_010 Hb_021422_010 Hb_002367_130--Hb_021422_010 Hb_001369_420 Hb_001369_420 Hb_002367_130--Hb_001369_420 Hb_000946_120 Hb_000946_120 Hb_012132_030--Hb_000946_120 Hb_017168_010 Hb_017168_010 Hb_012132_030--Hb_017168_010 Hb_010222_080 Hb_010222_080 Hb_012132_030--Hb_010222_080 Hb_001541_260 Hb_001541_260 Hb_012132_030--Hb_001541_260 Hb_144787_030 Hb_144787_030 Hb_012132_030--Hb_144787_030 Hb_003544_100 Hb_003544_100 Hb_003001_150--Hb_003544_100 Hb_002276_060 Hb_002276_060 Hb_003001_150--Hb_002276_060 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_000729_050 Hb_000729_050 Hb_003001_150--Hb_000729_050 Hb_007943_100 Hb_007943_100 Hb_003001_150--Hb_007943_100 Hb_000363_460 Hb_000363_460 Hb_007304_110--Hb_000363_460 Hb_007304_110--Hb_007943_100 Hb_000358_150 Hb_000358_150 Hb_007304_110--Hb_000358_150 Hb_001322_170 Hb_001322_170 Hb_007304_110--Hb_001322_170 Hb_007304_110--Hb_001136_090 Hb_000207_310--Hb_001828_160 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8578 3.9659 3.98732 2.97977 19.3071 10.252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.4203 8.38631 8.76408 7.25161 7.44861

CAGE analysis