Hb_000363_460

Information

Type -
Description -
Location Contig363: 405466-409113
Sequence    

Annotation

kegg
ID rcu:RCOM_0546720
description Protein grpE, putative (EC:5.1.3.1)
nr
ID XP_012070907.1
description PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q6NCY6
description Protein GrpE OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=grpE PE=3 SV=2
trembl
ID A0A067L547
description GrpE protein homolog OS=Jatropha curcas GN=JCGZ_00951 PE=3 SV=1
Gene Ontology
ID GO:0005759
description grpe protein mitochondrial-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_460 0.0 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_007304_110 0.0941157052 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
3 Hb_001136_100 0.107597881 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
4 Hb_004117_100 0.1150910661 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
5 Hb_001136_090 0.1183226166 - - Protein PNS1, putative [Ricinus communis]
6 Hb_048476_170 0.1268283817 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
7 Hb_002367_130 0.1268970939 - - UNC-50 family protein isoform 1 [Theobroma cacao]
8 Hb_000313_260 0.1274998334 - - auxin:hydrogen symporter, putative [Ricinus communis]
9 Hb_001959_050 0.1280061054 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
10 Hb_001322_170 0.1298530851 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
11 Hb_003001_150 0.1325571075 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000463_140 0.1327207851 - - Poly(rC)-binding protein, putative [Ricinus communis]
13 Hb_000041_280 0.1355007198 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
14 Hb_000883_030 0.1378056737 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
15 Hb_000003_290 0.1394957393 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
16 Hb_007943_100 0.1405931067 - - unnamed protein product [Coffea canephora]
17 Hb_150651_030 0.1431630226 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
18 Hb_004512_020 0.1436697752 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
19 Hb_001019_190 0.1438406805 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012132_030 0.1441753507 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000363_460 Hb_000363_460 Hb_007304_110 Hb_007304_110 Hb_000363_460--Hb_007304_110 Hb_001136_100 Hb_001136_100 Hb_000363_460--Hb_001136_100 Hb_004117_100 Hb_004117_100 Hb_000363_460--Hb_004117_100 Hb_001136_090 Hb_001136_090 Hb_000363_460--Hb_001136_090 Hb_048476_170 Hb_048476_170 Hb_000363_460--Hb_048476_170 Hb_002367_130 Hb_002367_130 Hb_000363_460--Hb_002367_130 Hb_007943_100 Hb_007943_100 Hb_007304_110--Hb_007943_100 Hb_000358_150 Hb_000358_150 Hb_007304_110--Hb_000358_150 Hb_007304_110--Hb_001136_100 Hb_001322_170 Hb_001322_170 Hb_007304_110--Hb_001322_170 Hb_007304_110--Hb_001136_090 Hb_001136_100--Hb_001136_090 Hb_001136_100--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_100--Hb_012132_030 Hb_003001_150 Hb_003001_150 Hb_001136_100--Hb_003001_150 Hb_000207_310 Hb_000207_310 Hb_001136_100--Hb_000207_310 Hb_000313_260 Hb_000313_260 Hb_004117_100--Hb_000313_260 Hb_000463_140 Hb_000463_140 Hb_004117_100--Hb_000463_140 Hb_034432_030 Hb_034432_030 Hb_004117_100--Hb_034432_030 Hb_000853_210 Hb_000853_210 Hb_004117_100--Hb_000853_210 Hb_005488_150 Hb_005488_150 Hb_004117_100--Hb_005488_150 Hb_004117_100--Hb_048476_170 Hb_000041_280 Hb_000041_280 Hb_001136_090--Hb_000041_280 Hb_001136_090--Hb_002367_130 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001136_090--Hb_000072_350 Hb_002890_180 Hb_002890_180 Hb_048476_170--Hb_002890_180 Hb_048476_170--Hb_001136_090 Hb_048476_170--Hb_000463_140 Hb_000832_130 Hb_000832_130 Hb_048476_170--Hb_000832_130 Hb_048476_170--Hb_007304_110 Hb_000116_180 Hb_000116_180 Hb_002367_130--Hb_000116_180 Hb_001828_160 Hb_001828_160 Hb_002367_130--Hb_001828_160 Hb_002367_130--Hb_000207_310 Hb_003018_130 Hb_003018_130 Hb_002367_130--Hb_003018_130 Hb_021422_010 Hb_021422_010 Hb_002367_130--Hb_021422_010 Hb_001369_420 Hb_001369_420 Hb_002367_130--Hb_001369_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.23909 3.10712 5.78948 3.66889 20.5232 8.69694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01855 5.91381 9.59657 5.86984 8.73548

CAGE analysis