Hb_002890_180

Information

Type -
Description -
Location Contig2890: 271663-291642
Sequence    

Annotation

kegg
ID rcu:RCOM_0495780
description Squamous cell carcinoma antigen recognized by T-cells, putative
nr
ID XP_012069130.1
description PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Jatropha curcas]
swissprot
ID B3DJT0
description Squamous cell carcinoma antigen recognized by T-cells 3 OS=Danio rerio GN=sart3 PE=2 SV=1
trembl
ID A0A067KXG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24895 PE=4 SV=1
Gene Ontology
ID GO:0005622
description squamous cell carcinoma antigen recognized by t-cells 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_180 0.0 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Jatropha curcas]
2 Hb_000796_030 0.0933578168 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
3 Hb_004718_010 0.0943273793 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
4 Hb_000072_350 0.0977433678 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
5 Hb_048476_170 0.0989469761 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
6 Hb_002188_110 0.1013426169 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_128743_010 0.1088527495 - - RNA-binding protein, putative [Ricinus communis]
8 Hb_001502_060 0.1101843387 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
9 Hb_001268_350 0.1109172959 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
10 Hb_144831_010 0.1110163346 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
11 Hb_183963_030 0.1121152605 - - DNA binding protein, putative [Ricinus communis]
12 Hb_000832_130 0.112916123 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
13 Hb_006649_060 0.1133797869 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000345_140 0.1141078403 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
15 Hb_010578_060 0.1141922923 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
16 Hb_000030_040 0.115511999 - - yth domain-containing protein, putative [Ricinus communis]
17 Hb_002233_100 0.1157478178 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
18 Hb_000529_260 0.1159642797 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
19 Hb_000946_120 0.1161700887 - - DNA binding protein, putative [Ricinus communis]
20 Hb_006637_050 0.1166994993 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_180 Hb_002890_180 Hb_000796_030 Hb_000796_030 Hb_002890_180--Hb_000796_030 Hb_004718_010 Hb_004718_010 Hb_002890_180--Hb_004718_010 Hb_000072_350 Hb_000072_350 Hb_002890_180--Hb_000072_350 Hb_048476_170 Hb_048476_170 Hb_002890_180--Hb_048476_170 Hb_002188_110 Hb_002188_110 Hb_002890_180--Hb_002188_110 Hb_128743_010 Hb_128743_010 Hb_002890_180--Hb_128743_010 Hb_009503_030 Hb_009503_030 Hb_000796_030--Hb_009503_030 Hb_000780_230 Hb_000780_230 Hb_000796_030--Hb_000780_230 Hb_002025_020 Hb_002025_020 Hb_000796_030--Hb_002025_020 Hb_003029_110 Hb_003029_110 Hb_000796_030--Hb_003029_110 Hb_014267_010 Hb_014267_010 Hb_000796_030--Hb_014267_010 Hb_009545_100 Hb_009545_100 Hb_000796_030--Hb_009545_100 Hb_010578_060 Hb_010578_060 Hb_004718_010--Hb_010578_060 Hb_000959_040 Hb_000959_040 Hb_004718_010--Hb_000959_040 Hb_001268_350 Hb_001268_350 Hb_004718_010--Hb_001268_350 Hb_004543_030 Hb_004543_030 Hb_004718_010--Hb_004543_030 Hb_002301_080 Hb_002301_080 Hb_004718_010--Hb_002301_080 Hb_001080_270 Hb_001080_270 Hb_004718_010--Hb_001080_270 Hb_000743_040 Hb_000743_040 Hb_000072_350--Hb_000743_040 Hb_001502_060 Hb_001502_060 Hb_000072_350--Hb_001502_060 Hb_000320_200 Hb_000320_200 Hb_000072_350--Hb_000320_200 Hb_000529_260 Hb_000529_260 Hb_000072_350--Hb_000529_260 Hb_003952_150 Hb_003952_150 Hb_000072_350--Hb_003952_150 Hb_000329_090 Hb_000329_090 Hb_000072_350--Hb_000329_090 Hb_004117_100 Hb_004117_100 Hb_048476_170--Hb_004117_100 Hb_001136_090 Hb_001136_090 Hb_048476_170--Hb_001136_090 Hb_000463_140 Hb_000463_140 Hb_048476_170--Hb_000463_140 Hb_000832_130 Hb_000832_130 Hb_048476_170--Hb_000832_130 Hb_007304_110 Hb_007304_110 Hb_048476_170--Hb_007304_110 Hb_183963_030 Hb_183963_030 Hb_002188_110--Hb_183963_030 Hb_000025_360 Hb_000025_360 Hb_002188_110--Hb_000025_360 Hb_002188_110--Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_001247_070 Hb_001247_070 Hb_002188_110--Hb_001247_070 Hb_004108_100 Hb_004108_100 Hb_128743_010--Hb_004108_100 Hb_000025_320 Hb_000025_320 Hb_128743_010--Hb_000025_320 Hb_144831_010 Hb_144831_010 Hb_128743_010--Hb_144831_010 Hb_000960_100 Hb_000960_100 Hb_128743_010--Hb_000960_100 Hb_000661_200 Hb_000661_200 Hb_128743_010--Hb_000661_200 Hb_001959_020 Hb_001959_020 Hb_128743_010--Hb_001959_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.48103 11.5956 2.72381 3.01566 17.9936 8.62225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64326 5.52506 8.64796 6.66604 6.69276

CAGE analysis