Hb_002276_060

Information

Type -
Description -
Location Contig2276: 79207-85548
Sequence    

Annotation

kegg
ID mdm:103414434
description DNA-directed RNA polymerase 1, mitochondrial-like
nr
ID KDO70243.1
description hypothetical protein CISIN_1g002019mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FSE5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002019mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23734: 85215-86903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_060 0.0 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
2 Hb_000170_190 0.0850700526 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
3 Hb_000034_040 0.0875661349 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
4 Hb_003001_150 0.0876699233 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_012286_010 0.0925155083 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
6 Hb_002193_010 0.0934262171 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
7 Hb_005181_110 0.0936090733 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
8 Hb_003544_100 0.0965810152 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
9 Hb_006915_070 0.0972661516 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
10 Hb_002601_130 0.0994168325 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
11 Hb_003938_080 0.1034368118 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
12 Hb_000261_350 0.1060450899 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
13 Hb_001322_210 0.1065551088 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
14 Hb_002974_060 0.1068167718 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
15 Hb_002493_020 0.106855022 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
16 Hb_009411_010 0.1080289743 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
17 Hb_015884_030 0.1085142823 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
18 Hb_007586_030 0.1096314014 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
19 Hb_002551_070 0.1113172165 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
20 Hb_000768_190 0.1115382727 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002276_060 Hb_002276_060 Hb_000170_190 Hb_000170_190 Hb_002276_060--Hb_000170_190 Hb_000034_040 Hb_000034_040 Hb_002276_060--Hb_000034_040 Hb_003001_150 Hb_003001_150 Hb_002276_060--Hb_003001_150 Hb_012286_010 Hb_012286_010 Hb_002276_060--Hb_012286_010 Hb_002193_010 Hb_002193_010 Hb_002276_060--Hb_002193_010 Hb_005181_110 Hb_005181_110 Hb_002276_060--Hb_005181_110 Hb_002601_130 Hb_002601_130 Hb_000170_190--Hb_002601_130 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000010_180 Hb_000010_180 Hb_000170_190--Hb_000010_180 Hb_008489_020 Hb_008489_020 Hb_000170_190--Hb_008489_020 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190 Hb_006915_070 Hb_006915_070 Hb_000034_040--Hb_006915_070 Hb_015884_030 Hb_015884_030 Hb_000034_040--Hb_015884_030 Hb_012799_030 Hb_012799_030 Hb_000034_040--Hb_012799_030 Hb_003938_080 Hb_003938_080 Hb_000034_040--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_000034_040--Hb_009411_010 Hb_002681_070 Hb_002681_070 Hb_000034_040--Hb_002681_070 Hb_003544_100 Hb_003544_100 Hb_003001_150--Hb_003544_100 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_000729_050 Hb_000729_050 Hb_003001_150--Hb_000729_050 Hb_007943_100 Hb_007943_100 Hb_003001_150--Hb_007943_100 Hb_002024_010 Hb_002024_010 Hb_012286_010--Hb_002024_010 Hb_004994_380 Hb_004994_380 Hb_012286_010--Hb_004994_380 Hb_012286_010--Hb_002193_010 Hb_012286_010--Hb_008489_020 Hb_012286_010--Hb_000170_190 Hb_002193_010--Hb_000170_190 Hb_003406_040 Hb_003406_040 Hb_002193_010--Hb_003406_040 Hb_002193_010--Hb_003001_150 Hb_002193_010--Hb_000729_050 Hb_005181_110--Hb_000034_040 Hb_005181_110--Hb_006915_070 Hb_012656_030 Hb_012656_030 Hb_005181_110--Hb_012656_030 Hb_000281_090 Hb_000281_090 Hb_005181_110--Hb_000281_090 Hb_005181_110--Hb_002681_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.08453 2.65824 1.09165 1.81709 6.1211 8.54167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45626 2.60997 3.97026 2.91447 5.7702

CAGE analysis