Hb_000170_190

Information

Type -
Description -
Location Contig170: 272858-277747
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09450g
description hypothetical protein
nr
ID XP_012078307.1
description PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
swissprot
ID P90648
description Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1
trembl
ID A0A067KKQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12142 PE=4 SV=1
Gene Ontology
ID GO:0004672
description f-box and wd40 domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15887: 273548-275456
cDNA
(Sanger)
(ID:Location)		 050_L20r.ab1: 277960-281240

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_190 0.0 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
2 Hb_002601_130 0.0830678505 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
3 Hb_002276_060 0.0850700526 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
4 Hb_000300_580 0.0885375223 - - PREDICTED: importin-5-like [Jatropha curcas]
5 Hb_000010_180 0.0931672928 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
6 Hb_008489_020 0.0980917262 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
7 Hb_000768_190 0.0992572846 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
8 Hb_004218_240 0.1000034475 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
9 Hb_002193_010 0.1005802793 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
10 Hb_012286_010 0.1011793191 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
11 Hb_005527_030 0.107109728 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
12 Hb_000714_050 0.1089244104 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
13 Hb_002291_070 0.1097084206 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
14 Hb_023278_010 0.1097547486 - - Chaperone protein DnaJ [Glycine soja]
15 Hb_000832_300 0.112580539 - - -
16 Hb_002551_070 0.1140464502 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
17 Hb_009543_020 0.1144316048 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
18 Hb_003544_100 0.1154243245 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
19 Hb_006915_060 0.1163163441 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
20 Hb_102269_010 0.1168321363 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]

Gene co-expression network

sample Hb_000170_190 Hb_000170_190 Hb_002601_130 Hb_002601_130 Hb_000170_190--Hb_002601_130 Hb_002276_060 Hb_002276_060 Hb_000170_190--Hb_002276_060 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000010_180 Hb_000010_180 Hb_000170_190--Hb_000010_180 Hb_008489_020 Hb_008489_020 Hb_000170_190--Hb_008489_020 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190 Hb_006663_070 Hb_006663_070 Hb_002601_130--Hb_006663_070 Hb_002601_130--Hb_002276_060 Hb_002551_070 Hb_002551_070 Hb_002601_130--Hb_002551_070 Hb_002601_130--Hb_008489_020 Hb_009535_020 Hb_009535_020 Hb_002601_130--Hb_009535_020 Hb_000034_040 Hb_000034_040 Hb_002276_060--Hb_000034_040 Hb_003001_150 Hb_003001_150 Hb_002276_060--Hb_003001_150 Hb_012286_010 Hb_012286_010 Hb_002276_060--Hb_012286_010 Hb_002193_010 Hb_002193_010 Hb_002276_060--Hb_002193_010 Hb_005181_110 Hb_005181_110 Hb_002276_060--Hb_005181_110 Hb_001437_100 Hb_001437_100 Hb_000300_580--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000300_580--Hb_002043_170 Hb_000335_010 Hb_000335_010 Hb_000300_580--Hb_000335_010 Hb_002883_010 Hb_002883_010 Hb_000300_580--Hb_002883_010 Hb_000250_070 Hb_000250_070 Hb_000300_580--Hb_000250_070 Hb_000329_490 Hb_000329_490 Hb_000300_580--Hb_000329_490 Hb_003544_100 Hb_003544_100 Hb_000010_180--Hb_003544_100 Hb_015884_030 Hb_015884_030 Hb_000010_180--Hb_015884_030 Hb_006915_060 Hb_006915_060 Hb_000010_180--Hb_006915_060 Hb_006449_050 Hb_006449_050 Hb_000010_180--Hb_006449_050 Hb_000010_180--Hb_000768_190 Hb_002909_050 Hb_002909_050 Hb_000010_180--Hb_002909_050 Hb_005488_060 Hb_005488_060 Hb_008489_020--Hb_005488_060 Hb_008489_020--Hb_012286_010 Hb_002084_020 Hb_002084_020 Hb_008489_020--Hb_002084_020 Hb_006915_070 Hb_006915_070 Hb_008489_020--Hb_006915_070 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_000037_110 Hb_000037_110 Hb_000768_190--Hb_000037_110 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_008595_010 Hb_008595_010 Hb_000768_190--Hb_008595_010 Hb_000768_190--Hb_006915_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.64986 4.70487 2.95889 3.37913 13.896 17.9068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.69287 3.02244 4.81287 5.23385 10.9629

CAGE analysis