Hb_005488_060

Information

Type -
Description -
Location Contig5488: 64612-67357
Sequence    

Annotation

kegg
ID rcu:RCOM_1517780
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_002524040.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q42602
description Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2
trembl
ID B9SDH1
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1517780 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 89a2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48111: 64516-66373 , PASA_asmbl_48113: 66857-67327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_060 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_008489_020 0.0913507226 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
3 Hb_002193_010 0.1142449752 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
4 Hb_009393_050 0.1200940058 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
5 Hb_001638_250 0.1229133014 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
6 Hb_000982_160 0.124097956 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
7 Hb_002863_040 0.1248331077 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
8 Hb_002527_030 0.1285232354 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
9 Hb_000808_080 0.1299884384 - - PREDICTED: dnaJ homolog subfamily B member 3 [Jatropha curcas]
10 Hb_000523_090 0.132674658 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
11 Hb_005977_090 0.1339983463 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
12 Hb_001866_110 0.1348213979 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
13 Hb_009767_090 0.1361337608 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002174_060 0.1367696488 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
15 Hb_028487_110 0.136869563 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
16 Hb_006915_070 0.1379625856 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
17 Hb_002067_020 0.1388994398 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000085_060 0.1391075949 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
19 Hb_028390_010 0.1392238869 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
20 Hb_000627_030 0.1392904977 - - amine oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005488_060 Hb_005488_060 Hb_008489_020 Hb_008489_020 Hb_005488_060--Hb_008489_020 Hb_002193_010 Hb_002193_010 Hb_005488_060--Hb_002193_010 Hb_009393_050 Hb_009393_050 Hb_005488_060--Hb_009393_050 Hb_001638_250 Hb_001638_250 Hb_005488_060--Hb_001638_250 Hb_000982_160 Hb_000982_160 Hb_005488_060--Hb_000982_160 Hb_002863_040 Hb_002863_040 Hb_005488_060--Hb_002863_040 Hb_000170_190 Hb_000170_190 Hb_008489_020--Hb_000170_190 Hb_012286_010 Hb_012286_010 Hb_008489_020--Hb_012286_010 Hb_002084_020 Hb_002084_020 Hb_008489_020--Hb_002084_020 Hb_002601_130 Hb_002601_130 Hb_008489_020--Hb_002601_130 Hb_006915_070 Hb_006915_070 Hb_008489_020--Hb_006915_070 Hb_002276_060 Hb_002276_060 Hb_002193_010--Hb_002276_060 Hb_002193_010--Hb_012286_010 Hb_002193_010--Hb_000170_190 Hb_003406_040 Hb_003406_040 Hb_002193_010--Hb_003406_040 Hb_003001_150 Hb_003001_150 Hb_002193_010--Hb_003001_150 Hb_000729_050 Hb_000729_050 Hb_002193_010--Hb_000729_050 Hb_004934_090 Hb_004934_090 Hb_009393_050--Hb_004934_090 Hb_009393_080 Hb_009393_080 Hb_009393_050--Hb_009393_080 Hb_000284_210 Hb_000284_210 Hb_009393_050--Hb_000284_210 Hb_001866_110 Hb_001866_110 Hb_009393_050--Hb_001866_110 Hb_007364_010 Hb_007364_010 Hb_009393_050--Hb_007364_010 Hb_000429_120 Hb_000429_120 Hb_009393_050--Hb_000429_120 Hb_005977_090 Hb_005977_090 Hb_001638_250--Hb_005977_090 Hb_028487_110 Hb_028487_110 Hb_001638_250--Hb_028487_110 Hb_001638_250--Hb_004934_090 Hb_001680_010 Hb_001680_010 Hb_001638_250--Hb_001680_010 Hb_000002_040 Hb_000002_040 Hb_001638_250--Hb_000002_040 Hb_001541_020 Hb_001541_020 Hb_001638_250--Hb_001541_020 Hb_028390_010 Hb_028390_010 Hb_000982_160--Hb_028390_010 Hb_000212_240 Hb_000212_240 Hb_000982_160--Hb_000212_240 Hb_000367_130 Hb_000367_130 Hb_000982_160--Hb_000367_130 Hb_000913_050 Hb_000913_050 Hb_000982_160--Hb_000913_050 Hb_000025_110 Hb_000025_110 Hb_000982_160--Hb_000025_110 Hb_000329_090 Hb_000329_090 Hb_000982_160--Hb_000329_090 Hb_000195_020 Hb_000195_020 Hb_002863_040--Hb_000195_020 Hb_004096_030 Hb_004096_030 Hb_002863_040--Hb_004096_030 Hb_004048_090 Hb_004048_090 Hb_002863_040--Hb_004048_090 Hb_002863_040--Hb_003406_040 Hb_004195_280 Hb_004195_280 Hb_002863_040--Hb_004195_280 Hb_004096_020 Hb_004096_020 Hb_002863_040--Hb_004096_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.7021 28.5091 14.5371 14.4228 71.5381 86.1948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.5999 28.4473 29.4642 12.2921 54.4628

CAGE analysis