Hb_009393_080

Information

Type -
Description -
Location Contig9393: 42996-50719
Sequence    

Annotation

kegg
ID egr:104434576
description protein ROOT PRIMORDIUM DEFECTIVE 1-like
nr
ID KEH16531.1
description plant organelle RNA recognition domain protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A0A072TH43
description Plant organelle RNA recognition domain protein OS=Medicago truncatula GN=MTR_0153s0070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63050: 32910-45742 , PASA_asmbl_63051: 46999-47376 , PASA_asmbl_63052: 46759-47884 , PASA_asmbl_63053: 48135-48367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_080 0.0 - - plant organelle RNA recognition domain protein [Medicago truncatula]
2 Hb_003106_060 0.0873388588 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
3 Hb_009393_050 0.0919824949 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
4 Hb_004619_020 0.0937245934 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000373_280 0.0974158007 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
6 Hb_063090_010 0.1019175176 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_011673_030 0.107044756 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
8 Hb_001006_140 0.1086116754 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
9 Hb_001545_120 0.1088084463 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
10 Hb_018838_030 0.1091916527 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000599_110 0.1101105205 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003226_180 0.1101740975 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
13 Hb_000107_620 0.1101806788 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
14 Hb_000853_420 0.1110818833 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_003464_060 0.1139105438 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
16 Hb_002137_020 0.1153627015 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_007441_200 0.1165908058 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
18 Hb_000483_200 0.1182655166 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_005694_110 0.1189846914 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
20 Hb_000853_170 0.1192834525 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_009393_080 Hb_009393_080 Hb_003106_060 Hb_003106_060 Hb_009393_080--Hb_003106_060 Hb_009393_050 Hb_009393_050 Hb_009393_080--Hb_009393_050 Hb_004619_020 Hb_004619_020 Hb_009393_080--Hb_004619_020 Hb_000373_280 Hb_000373_280 Hb_009393_080--Hb_000373_280 Hb_063090_010 Hb_063090_010 Hb_009393_080--Hb_063090_010 Hb_011673_030 Hb_011673_030 Hb_009393_080--Hb_011673_030 Hb_007441_200 Hb_007441_200 Hb_003106_060--Hb_007441_200 Hb_003226_180 Hb_003226_180 Hb_003106_060--Hb_003226_180 Hb_000227_120 Hb_000227_120 Hb_003106_060--Hb_000227_120 Hb_003142_020 Hb_003142_020 Hb_003106_060--Hb_003142_020 Hb_003464_060 Hb_003464_060 Hb_003106_060--Hb_003464_060 Hb_000329_470 Hb_000329_470 Hb_003106_060--Hb_000329_470 Hb_004934_090 Hb_004934_090 Hb_009393_050--Hb_004934_090 Hb_000284_210 Hb_000284_210 Hb_009393_050--Hb_000284_210 Hb_001866_110 Hb_001866_110 Hb_009393_050--Hb_001866_110 Hb_007364_010 Hb_007364_010 Hb_009393_050--Hb_007364_010 Hb_000429_120 Hb_000429_120 Hb_009393_050--Hb_000429_120 Hb_000959_260 Hb_000959_260 Hb_004619_020--Hb_000959_260 Hb_002205_070 Hb_002205_070 Hb_004619_020--Hb_002205_070 Hb_004619_020--Hb_011673_030 Hb_006922_100 Hb_006922_100 Hb_004619_020--Hb_006922_100 Hb_000889_020 Hb_000889_020 Hb_004619_020--Hb_000889_020 Hb_000373_280--Hb_003226_180 Hb_018838_030 Hb_018838_030 Hb_000373_280--Hb_018838_030 Hb_000345_170 Hb_000345_170 Hb_000373_280--Hb_000345_170 Hb_001545_120 Hb_001545_120 Hb_000373_280--Hb_001545_120 Hb_000120_730 Hb_000120_730 Hb_000373_280--Hb_000120_730 Hb_002890_020 Hb_002890_020 Hb_000373_280--Hb_002890_020 Hb_002079_010 Hb_002079_010 Hb_063090_010--Hb_002079_010 Hb_001789_240 Hb_001789_240 Hb_063090_010--Hb_001789_240 Hb_063090_010--Hb_018838_030 Hb_005993_040 Hb_005993_040 Hb_063090_010--Hb_005993_040 Hb_000853_170 Hb_000853_170 Hb_063090_010--Hb_000853_170 Hb_006400_030 Hb_006400_030 Hb_063090_010--Hb_006400_030 Hb_000815_210 Hb_000815_210 Hb_011673_030--Hb_000815_210 Hb_011673_030--Hb_003464_060 Hb_011673_030--Hb_001545_120 Hb_001006_140 Hb_001006_140 Hb_011673_030--Hb_001006_140 Hb_002783_260 Hb_002783_260 Hb_011673_030--Hb_002783_260 Hb_003406_010 Hb_003406_010 Hb_011673_030--Hb_003406_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0263 1.84761 0.673417 0.482437 2.65226 3.2505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74015 2.95583 1.96221 1.87793 2.10716

CAGE analysis