Hb_004619_020

Information

Type -
Description -
Location Contig4619: 11077-21570
Sequence    

Annotation

kegg
ID rcu:RCOM_1320110
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002529286.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q0WVV0
description Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1
trembl
ID B9STG7
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1320110 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43747: 10994-19624 , PASA_asmbl_43748: 11905-15398 , PASA_asmbl_43749: 11007-15398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004619_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000959_260 0.0862875852 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
3 Hb_002205_070 0.0885091379 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
4 Hb_011673_030 0.0890682599 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
5 Hb_006922_100 0.0931003016 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
6 Hb_009393_080 0.0937245934 - - plant organelle RNA recognition domain protein [Medicago truncatula]
7 Hb_000889_020 0.0959013923 - - ribosome biogenesis protein brix, putative [Ricinus communis]
8 Hb_001006_140 0.0983541801 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
9 Hb_007380_070 0.0989026214 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
10 Hb_001019_230 0.0993881812 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
11 Hb_118707_030 0.100430993 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
12 Hb_022693_060 0.1008950776 - - -
13 Hb_003464_060 0.1009893673 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
14 Hb_000107_620 0.1012887476 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
15 Hb_011883_010 0.1018433711 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
16 Hb_003106_060 0.1020918647 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
17 Hb_009393_050 0.1049883565 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
18 Hb_000768_040 0.1051456462 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
19 Hb_001258_090 0.1065768983 - - PREDICTED: protein spt2-like [Jatropha curcas]
20 Hb_004096_030 0.1067952921 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004619_020 Hb_004619_020 Hb_000959_260 Hb_000959_260 Hb_004619_020--Hb_000959_260 Hb_002205_070 Hb_002205_070 Hb_004619_020--Hb_002205_070 Hb_011673_030 Hb_011673_030 Hb_004619_020--Hb_011673_030 Hb_006922_100 Hb_006922_100 Hb_004619_020--Hb_006922_100 Hb_009393_080 Hb_009393_080 Hb_004619_020--Hb_009393_080 Hb_000889_020 Hb_000889_020 Hb_004619_020--Hb_000889_020 Hb_010504_020 Hb_010504_020 Hb_000959_260--Hb_010504_020 Hb_002835_080 Hb_002835_080 Hb_000959_260--Hb_002835_080 Hb_012008_020 Hb_012008_020 Hb_000959_260--Hb_012008_020 Hb_148644_010 Hb_148644_010 Hb_000959_260--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_000959_260--Hb_001489_150 Hb_002477_330 Hb_002477_330 Hb_000959_260--Hb_002477_330 Hb_118707_030 Hb_118707_030 Hb_002205_070--Hb_118707_030 Hb_000107_620 Hb_000107_620 Hb_002205_070--Hb_000107_620 Hb_009838_080 Hb_009838_080 Hb_002205_070--Hb_009838_080 Hb_000236_070 Hb_000236_070 Hb_002205_070--Hb_000236_070 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_000815_210 Hb_000815_210 Hb_011673_030--Hb_000815_210 Hb_003464_060 Hb_003464_060 Hb_011673_030--Hb_003464_060 Hb_001545_120 Hb_001545_120 Hb_011673_030--Hb_001545_120 Hb_001006_140 Hb_001006_140 Hb_011673_030--Hb_001006_140 Hb_002783_260 Hb_002783_260 Hb_011673_030--Hb_002783_260 Hb_003406_010 Hb_003406_010 Hb_011673_030--Hb_003406_010 Hb_005663_060 Hb_005663_060 Hb_006922_100--Hb_005663_060 Hb_004055_030 Hb_004055_030 Hb_006922_100--Hb_004055_030 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_007441_120 Hb_007441_120 Hb_006922_100--Hb_007441_120 Hb_001199_020 Hb_001199_020 Hb_006922_100--Hb_001199_020 Hb_003106_060 Hb_003106_060 Hb_009393_080--Hb_003106_060 Hb_009393_050 Hb_009393_050 Hb_009393_080--Hb_009393_050 Hb_000373_280 Hb_000373_280 Hb_009393_080--Hb_000373_280 Hb_063090_010 Hb_063090_010 Hb_009393_080--Hb_063090_010 Hb_009393_080--Hb_011673_030 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000179_020 Hb_000179_020 Hb_000889_020--Hb_000179_020 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81368 7.11253 4.41348 3.64042 8.46857 16.4459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0146 10.9568 10.5369 5.30247 8.53332

CAGE analysis