Hb_008489_020

Information

Type -
Description -
Location Contig8489: 17805-21034
Sequence    

Annotation

kegg
ID cic:CICLE_v10032003mg
description hypothetical protein
nr
ID XP_012085481.1
description PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K334
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17813 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60271: 17750-21017 , PASA_asmbl_60272: 21274-21697
cDNA
(Sanger)
(ID:Location)		 040_M08.ab1: 20649-20841 , 052_C18.ab1: 20649-20841

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008489_020 0.0 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
2 Hb_005488_060 0.0913507226 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000170_190 0.0980917262 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
4 Hb_012286_010 0.100431936 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
5 Hb_002084_020 0.1058521667 - - hypothetical protein JCGZ_04066 [Jatropha curcas]
6 Hb_002601_130 0.1064585736 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
7 Hb_006915_070 0.1119018751 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
8 Hb_000523_090 0.1153630089 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
9 Hb_000982_160 0.1186468085 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
10 Hb_002276_060 0.1192047257 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
11 Hb_000714_050 0.1217403651 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
12 Hb_002193_010 0.121813434 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
13 Hb_153533_010 0.1229608262 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
14 Hb_000567_050 0.1234761531 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
15 Hb_000832_300 0.1238885124 - - -
16 Hb_010642_030 0.1269463181 - - zinc phosphodiesterase, putative [Ricinus communis]
17 Hb_023278_010 0.1273773124 - - Chaperone protein DnaJ [Glycine soja]
18 Hb_012098_110 0.1275065762 - - Ribonuclease 3 [Gossypium arboreum]
19 Hb_001638_250 0.1281734545 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
20 Hb_000429_120 0.1283909789 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]

Gene co-expression network

sample Hb_008489_020 Hb_008489_020 Hb_005488_060 Hb_005488_060 Hb_008489_020--Hb_005488_060 Hb_000170_190 Hb_000170_190 Hb_008489_020--Hb_000170_190 Hb_012286_010 Hb_012286_010 Hb_008489_020--Hb_012286_010 Hb_002084_020 Hb_002084_020 Hb_008489_020--Hb_002084_020 Hb_002601_130 Hb_002601_130 Hb_008489_020--Hb_002601_130 Hb_006915_070 Hb_006915_070 Hb_008489_020--Hb_006915_070 Hb_002193_010 Hb_002193_010 Hb_005488_060--Hb_002193_010 Hb_009393_050 Hb_009393_050 Hb_005488_060--Hb_009393_050 Hb_001638_250 Hb_001638_250 Hb_005488_060--Hb_001638_250 Hb_000982_160 Hb_000982_160 Hb_005488_060--Hb_000982_160 Hb_002863_040 Hb_002863_040 Hb_005488_060--Hb_002863_040 Hb_000170_190--Hb_002601_130 Hb_002276_060 Hb_002276_060 Hb_000170_190--Hb_002276_060 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000010_180 Hb_000010_180 Hb_000170_190--Hb_000010_180 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190 Hb_002024_010 Hb_002024_010 Hb_012286_010--Hb_002024_010 Hb_012286_010--Hb_002276_060 Hb_004994_380 Hb_004994_380 Hb_012286_010--Hb_004994_380 Hb_012286_010--Hb_002193_010 Hb_012286_010--Hb_000170_190 Hb_000836_440 Hb_000836_440 Hb_002084_020--Hb_000836_440 Hb_048476_180 Hb_048476_180 Hb_002084_020--Hb_048476_180 Hb_003938_080 Hb_003938_080 Hb_002084_020--Hb_003938_080 Hb_165928_020 Hb_165928_020 Hb_002084_020--Hb_165928_020 Hb_000820_170 Hb_000820_170 Hb_002084_020--Hb_000820_170 Hb_000034_040 Hb_000034_040 Hb_002084_020--Hb_000034_040 Hb_006663_070 Hb_006663_070 Hb_002601_130--Hb_006663_070 Hb_002601_130--Hb_002276_060 Hb_002551_070 Hb_002551_070 Hb_002601_130--Hb_002551_070 Hb_009535_020 Hb_009535_020 Hb_002601_130--Hb_009535_020 Hb_006915_070--Hb_000034_040 Hb_002681_070 Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.6364 35.3276 17.5832 16.2912 56.8177 92.9425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.538 23.0344 25.3841 24.009 66.843

CAGE analysis