Hb_000856_110

Information

Type -
Description -
Location Contig856: 84735-99645
Sequence    

Annotation

kegg
ID rcu:RCOM_1513200
description zinc finger protein, putative
nr
ID XP_012080188.1
description PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
swissprot
ID O14099
description Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=3 SV=1
trembl
ID B9R926
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1513200 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60571: 88167-88415 , PASA_asmbl_60574: 90465-91235 , PASA_asmbl_60575: 92346-104808 , PASA_asmbl_60576: 92530-104937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_110 0.0 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
2 Hb_004100_080 0.0500155842 - - conserved hypothetical protein [Ricinus communis]
3 Hb_023386_020 0.065794808 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
4 Hb_004841_010 0.0674692684 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
5 Hb_004412_010 0.0760371859 - - -
6 Hb_006915_070 0.0790138715 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
7 Hb_000165_250 0.08150307 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
8 Hb_008785_040 0.0827388855 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
9 Hb_165928_020 0.0839184624 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
10 Hb_001776_140 0.0845327428 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_000029_050 0.0853959542 - - expressed protein, putative [Ricinus communis]
12 Hb_000502_050 0.0854159375 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
13 Hb_002518_280 0.0857260068 - - phosphate transporter [Manihot esculenta]
14 Hb_000034_040 0.0867124043 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
15 Hb_008554_030 0.0882089069 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
16 Hb_000926_190 0.0899016286 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
17 Hb_013607_030 0.0902931576 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
18 Hb_012022_160 0.0907052984 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
19 Hb_000920_060 0.0907261294 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
20 Hb_000836_440 0.0916724818 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000856_110 Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_000856_110--Hb_004100_080 Hb_023386_020 Hb_023386_020 Hb_000856_110--Hb_023386_020 Hb_004841_010 Hb_004841_010 Hb_000856_110--Hb_004841_010 Hb_004412_010 Hb_004412_010 Hb_000856_110--Hb_004412_010 Hb_006915_070 Hb_006915_070 Hb_000856_110--Hb_006915_070 Hb_000165_250 Hb_000165_250 Hb_000856_110--Hb_000165_250 Hb_004100_080--Hb_023386_020 Hb_000160_210 Hb_000160_210 Hb_004100_080--Hb_000160_210 Hb_004100_080--Hb_004841_010 Hb_007657_010 Hb_007657_010 Hb_004100_080--Hb_007657_010 Hb_004100_080--Hb_004412_010 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_165928_020 Hb_165928_020 Hb_004841_010--Hb_165928_020 Hb_004841_010--Hb_023386_020 Hb_008643_210 Hb_008643_210 Hb_004841_010--Hb_008643_210 Hb_016172_020 Hb_016172_020 Hb_004841_010--Hb_016172_020 Hb_007575_050 Hb_007575_050 Hb_004412_010--Hb_007575_050 Hb_004412_010--Hb_023386_020 Hb_003878_070 Hb_003878_070 Hb_004412_010--Hb_003878_070 Hb_004412_010--Hb_165928_020 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_023386_040 Hb_023386_040 Hb_004412_010--Hb_023386_040 Hb_000034_040 Hb_000034_040 Hb_006915_070--Hb_000034_040 Hb_002681_070 Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000029_050 Hb_000029_050 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52137 2.85912 2.40628 1.8234 4.73044 5.04575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22182 4.37982 2.86412 2.03352 3.93035

CAGE analysis