Hb_000195_020

Information

Type -
Description -
Location Contig195: 54350-59406
Sequence    

Annotation

kegg
ID tcc:TCM_033598
description Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1
nr
ID XP_012075198.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
swissprot
ID P0C8Q2
description Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
trembl
ID A0A061FIH8
description Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_033598 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19457: 54553-54774 , PASA_asmbl_19458: 55167-55335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000195_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
2 Hb_001797_050 0.069256198 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
3 Hb_004096_020 0.0761517277 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
4 Hb_005532_050 0.0770193386 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
5 Hb_003938_080 0.0776699412 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
6 Hb_033834_010 0.080859653 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_009411_010 0.0823629109 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
8 Hb_004204_080 0.0824528039 - - diacylglycerol kinase, theta, putative [Ricinus communis]
9 Hb_002863_040 0.0850588281 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
10 Hb_022408_010 0.0858289824 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
11 Hb_000244_250 0.0862440534 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
12 Hb_006915_060 0.0866418872 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
13 Hb_004724_060 0.0875939004 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
14 Hb_001541_020 0.0895040319 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
15 Hb_004447_060 0.0903349029 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
16 Hb_003362_040 0.090475719 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
17 Hb_001245_070 0.0905120271 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_000803_190 0.0905925237 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
19 Hb_011139_030 0.0906713114 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
20 Hb_004048_090 0.0908098355 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]

Gene co-expression network

sample Hb_000195_020 Hb_000195_020 Hb_001797_050 Hb_001797_050 Hb_000195_020--Hb_001797_050 Hb_004096_020 Hb_004096_020 Hb_000195_020--Hb_004096_020 Hb_005532_050 Hb_005532_050 Hb_000195_020--Hb_005532_050 Hb_003938_080 Hb_003938_080 Hb_000195_020--Hb_003938_080 Hb_033834_010 Hb_033834_010 Hb_000195_020--Hb_033834_010 Hb_009411_010 Hb_009411_010 Hb_000195_020--Hb_009411_010 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_046615_020 Hb_046615_020 Hb_004096_020--Hb_046615_020 Hb_001871_040 Hb_001871_040 Hb_004096_020--Hb_001871_040 Hb_003406_040 Hb_003406_040 Hb_004096_020--Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_004096_020--Hb_123777_030 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080 Hb_003464_050 Hb_003464_050 Hb_005532_050--Hb_003464_050 Hb_001680_010 Hb_001680_010 Hb_005532_050--Hb_001680_010 Hb_001301_200 Hb_001301_200 Hb_005532_050--Hb_001301_200 Hb_005532_050--Hb_001797_050 Hb_008803_090 Hb_008803_090 Hb_005532_050--Hb_008803_090 Hb_001541_020 Hb_001541_020 Hb_005532_050--Hb_001541_020 Hb_003938_080--Hb_009411_010 Hb_003216_080 Hb_003216_080 Hb_003938_080--Hb_003216_080 Hb_003544_100 Hb_003544_100 Hb_003938_080--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_005730_030 Hb_005730_030 Hb_033834_010--Hb_005730_030 Hb_175338_020 Hb_175338_020 Hb_033834_010--Hb_175338_020 Hb_033834_010--Hb_004096_020 Hb_033834_010--Hb_001541_020 Hb_002301_220 Hb_002301_220 Hb_033834_010--Hb_002301_220 Hb_009411_010--Hb_003544_100 Hb_009411_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_009411_010--Hb_000502_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01232 0.67444 0.481604 0.25015 1.01519 1.50077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.600658 0.472654 0.927308 0.380674 0.430836

CAGE analysis