Hb_033834_010

Information

Type -
Description -
Location Contig33834: 3533-9405
Sequence    

Annotation

kegg
ID rcu:RCOM_0757640
description leucyl-tRNA synthetase, putative (EC:6.1.1.4)
nr
ID XP_012066702.1
description PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID Q8BMJ2
description Leucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Lars PE=1 SV=2
trembl
ID A0A067LEE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00261 PE=3 SV=1
Gene Ontology
ID GO:0005829
description leucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35386: 3695-4471 , PASA_asmbl_35387: 5023-5184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033834_010 0.0 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_005730_030 0.0764865653 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
3 Hb_175338_020 0.0800146095 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
4 Hb_004096_020 0.0805212443 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
5 Hb_001541_020 0.0805251579 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
6 Hb_000195_020 0.080859653 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
7 Hb_002301_220 0.0816269702 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
8 Hb_022408_010 0.0830753656 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
9 Hb_000244_250 0.0831114094 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
10 Hb_010222_080 0.0831331874 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
11 Hb_000390_070 0.0848128176 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
12 Hb_140171_010 0.0871652985 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
13 Hb_004055_040 0.0877509753 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
14 Hb_000009_210 0.0881745335 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
15 Hb_000627_080 0.0903355335 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_001141_330 0.0908894434 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
17 Hb_002255_050 0.0910121455 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_003656_160 0.0918162999 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
19 Hb_004204_080 0.0931040552 - - diacylglycerol kinase, theta, putative [Ricinus communis]
20 Hb_000465_470 0.0934954882 - - unknown [Picea sitchensis]

Gene co-expression network

sample Hb_033834_010 Hb_033834_010 Hb_005730_030 Hb_005730_030 Hb_033834_010--Hb_005730_030 Hb_175338_020 Hb_175338_020 Hb_033834_010--Hb_175338_020 Hb_004096_020 Hb_004096_020 Hb_033834_010--Hb_004096_020 Hb_001541_020 Hb_001541_020 Hb_033834_010--Hb_001541_020 Hb_000195_020 Hb_000195_020 Hb_033834_010--Hb_000195_020 Hb_002301_220 Hb_002301_220 Hb_033834_010--Hb_002301_220 Hb_004055_040 Hb_004055_040 Hb_005730_030--Hb_004055_040 Hb_140171_010 Hb_140171_010 Hb_005730_030--Hb_140171_010 Hb_000244_250 Hb_000244_250 Hb_005730_030--Hb_000244_250 Hb_002928_060 Hb_002928_060 Hb_005730_030--Hb_002928_060 Hb_022408_010 Hb_022408_010 Hb_005730_030--Hb_022408_010 Hb_004204_080 Hb_004204_080 Hb_005730_030--Hb_004204_080 Hb_004162_280 Hb_004162_280 Hb_175338_020--Hb_004162_280 Hb_000227_380 Hb_000227_380 Hb_175338_020--Hb_000227_380 Hb_000424_010 Hb_000424_010 Hb_175338_020--Hb_000424_010 Hb_002652_040 Hb_002652_040 Hb_175338_020--Hb_002652_040 Hb_000529_260 Hb_000529_260 Hb_175338_020--Hb_000529_260 Hb_007849_020 Hb_007849_020 Hb_175338_020--Hb_007849_020 Hb_046615_020 Hb_046615_020 Hb_004096_020--Hb_046615_020 Hb_001871_040 Hb_001871_040 Hb_004096_020--Hb_001871_040 Hb_003406_040 Hb_003406_040 Hb_004096_020--Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_004096_020--Hb_123777_030 Hb_004096_020--Hb_000195_020 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080 Hb_001541_020--Hb_022408_010 Hb_000107_500 Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_001541_020--Hb_000244_250 Hb_001541_020--Hb_004162_280 Hb_001541_020--Hb_002301_220 Hb_001797_050 Hb_001797_050 Hb_000195_020--Hb_001797_050 Hb_005532_050 Hb_005532_050 Hb_000195_020--Hb_005532_050 Hb_003938_080 Hb_003938_080 Hb_000195_020--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_000195_020--Hb_009411_010 Hb_003656_160 Hb_003656_160 Hb_002301_220--Hb_003656_160 Hb_008554_120 Hb_008554_120 Hb_002301_220--Hb_008554_120 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_002301_220--Hb_022408_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64271 1.36731 0.902721 0.51975 2.84487 2.7788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.833659 1.06126 2.07207 1.02082 0.846223

CAGE analysis