Hb_001640_030

Information

Type -
Description -
Location Contig1640: 68410-70080
Sequence    

Annotation

kegg
ID rcu:RCOM_0879260
description hypothetical protein
nr
ID XP_012067089.1
description PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01886 PE=4 SV=1
Gene Ontology
ID GO:0005794
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15069: 68156-70531
cDNA
(Sanger)
(ID:Location)		 033_H01.ab1: 69789-70469

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001640_030 0.0 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
2 Hb_002631_070 0.0717664555 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
3 Hb_003994_280 0.0737511417 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
4 Hb_152202_010 0.0814769034 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
5 Hb_000362_150 0.086700503 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
6 Hb_004680_120 0.0953130345 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
7 Hb_000050_190 0.096462639 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011486_040 0.0998669757 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
9 Hb_005227_010 0.1010964301 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
10 Hb_005291_050 0.1020332543 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
11 Hb_002078_160 0.1032863281 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
12 Hb_001018_110 0.103651415 - - unnamed protein product [Coffea canephora]
13 Hb_000370_020 0.1045650777 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001109_060 0.104871091 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000933_060 0.1054851109 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012322_010 0.1055224715 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_000212_380 0.1056947907 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
18 Hb_001948_130 0.1063414024 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
19 Hb_001898_210 0.1066413734 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
20 Hb_000300_050 0.1068162388 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001640_030 Hb_001640_030 Hb_002631_070 Hb_002631_070 Hb_001640_030--Hb_002631_070 Hb_003994_280 Hb_003994_280 Hb_001640_030--Hb_003994_280 Hb_152202_010 Hb_152202_010 Hb_001640_030--Hb_152202_010 Hb_000362_150 Hb_000362_150 Hb_001640_030--Hb_000362_150 Hb_004680_120 Hb_004680_120 Hb_001640_030--Hb_004680_120 Hb_000050_190 Hb_000050_190 Hb_001640_030--Hb_000050_190 Hb_002631_070--Hb_003994_280 Hb_009851_050 Hb_009851_050 Hb_002631_070--Hb_009851_050 Hb_000579_240 Hb_000579_240 Hb_002631_070--Hb_000579_240 Hb_000004_030 Hb_000004_030 Hb_002631_070--Hb_000004_030 Hb_002631_070--Hb_004680_120 Hb_000213_010 Hb_000213_010 Hb_003994_280--Hb_000213_010 Hb_000048_060 Hb_000048_060 Hb_003994_280--Hb_000048_060 Hb_001018_110 Hb_001018_110 Hb_003994_280--Hb_001018_110 Hb_090051_030 Hb_090051_030 Hb_003994_280--Hb_090051_030 Hb_007919_100 Hb_007919_100 Hb_152202_010--Hb_007919_100 Hb_012194_050 Hb_012194_050 Hb_152202_010--Hb_012194_050 Hb_032050_040 Hb_032050_040 Hb_152202_010--Hb_032050_040 Hb_152202_010--Hb_000362_150 Hb_001898_210 Hb_001898_210 Hb_152202_010--Hb_001898_210 Hb_009529_030 Hb_009529_030 Hb_000362_150--Hb_009529_030 Hb_001496_070 Hb_001496_070 Hb_000362_150--Hb_001496_070 Hb_000362_150--Hb_000004_030 Hb_000362_150--Hb_032050_040 Hb_002493_020 Hb_002493_020 Hb_000362_150--Hb_002493_020 Hb_001498_010 Hb_001498_010 Hb_004680_120--Hb_001498_010 Hb_011228_010 Hb_011228_010 Hb_004680_120--Hb_011228_010 Hb_001279_030 Hb_001279_030 Hb_004680_120--Hb_001279_030 Hb_003912_030 Hb_003912_030 Hb_004680_120--Hb_003912_030 Hb_001005_050 Hb_001005_050 Hb_004680_120--Hb_001005_050 Hb_003544_140 Hb_003544_140 Hb_004680_120--Hb_003544_140 Hb_004672_040 Hb_004672_040 Hb_000050_190--Hb_004672_040 Hb_000599_180 Hb_000599_180 Hb_000050_190--Hb_000599_180 Hb_009548_020 Hb_009548_020 Hb_000050_190--Hb_009548_020 Hb_005291_050 Hb_005291_050 Hb_000050_190--Hb_005291_050 Hb_003168_110 Hb_003168_110 Hb_000050_190--Hb_003168_110 Hb_006634_070 Hb_006634_070 Hb_000050_190--Hb_006634_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2595 11.6854 12.5969 34.313 18.6096 31.6056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2508 11.2507 22.9403 14.9776 29.8426

CAGE analysis