Hb_000608_380

Information

Type -
Description -
Location Contig608: 211399-215908
Sequence    

Annotation

kegg
ID rcu:RCOM_1077660
description hypothetical protein
nr
ID XP_002514815.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RM46
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50864: 211440-216170 , PASA_asmbl_50867: 213086-213346 , PASA_asmbl_50868: 215409-215525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_069662_010 0.0821192795 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
3 Hb_006538_120 0.0883989219 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
4 Hb_000441_060 0.0927088905 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
5 Hb_005127_030 0.1007102804 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_000221_140 0.1067239523 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_001205_300 0.1084809866 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
8 Hb_001660_120 0.1094525284 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
9 Hb_000237_200 0.109549857 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
10 Hb_000046_330 0.111117027 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
11 Hb_001541_050 0.1130260589 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
12 Hb_003752_070 0.1142770318 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
13 Hb_031284_070 0.1159016303 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
14 Hb_000920_030 0.1166466232 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_013405_080 0.1166575149 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
16 Hb_000108_020 0.1168128972 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
17 Hb_000116_190 0.1179707669 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002774_190 0.1180153668 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
19 Hb_003462_070 0.1184726082 - - arsenical pump-driving atpase, putative [Ricinus communis]
20 Hb_001022_030 0.1185868023 - - PREDICTED: sorting nexin 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_380 Hb_000608_380 Hb_069662_010 Hb_069662_010 Hb_000608_380--Hb_069662_010 Hb_006538_120 Hb_006538_120 Hb_000608_380--Hb_006538_120 Hb_000441_060 Hb_000441_060 Hb_000608_380--Hb_000441_060 Hb_005127_030 Hb_005127_030 Hb_000608_380--Hb_005127_030 Hb_000221_140 Hb_000221_140 Hb_000608_380--Hb_000221_140 Hb_001205_300 Hb_001205_300 Hb_000608_380--Hb_001205_300 Hb_004531_140 Hb_004531_140 Hb_069662_010--Hb_004531_140 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_000920_030 Hb_000920_030 Hb_000441_060--Hb_000920_030 Hb_000441_060--Hb_069662_010 Hb_003752_070 Hb_003752_070 Hb_000441_060--Hb_003752_070 Hb_000441_060--Hb_006538_120 Hb_000029_110 Hb_000029_110 Hb_000441_060--Hb_000029_110 Hb_005127_030--Hb_000221_140 Hb_007534_050 Hb_007534_050 Hb_005127_030--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_005127_030--Hb_005731_160 Hb_012150_030 Hb_012150_030 Hb_005127_030--Hb_012150_030 Hb_000212_440 Hb_000212_440 Hb_005127_030--Hb_000212_440 Hb_001660_120 Hb_001660_120 Hb_000221_140--Hb_001660_120 Hb_000221_140--Hb_009775_010 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_003462_070 Hb_003462_070 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17438 2.38664 7.55643 5.08782 3.43335 6.32737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.09478 4.37164 1.18207 3.02544 10.5245

CAGE analysis