Hb_000441_060

Information

Type -
Description -
Location Contig441: 62030-64828
Sequence    

Annotation

kegg
ID rcu:RCOM_0290920
description hypothetical protein
nr
ID XP_012075638.1
description PREDICTED: glycolipid transfer protein [Jatropha curcas]
swissprot
ID O64587
description Accelerated cell death 11 OS=Arabidopsis thaliana GN=ACD11 PE=1 SV=1
trembl
ID A0A067KIU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09231 PE=4 SV=1
Gene Ontology
ID GO:0005737
description accelerated cell death partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_060 0.0 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
2 Hb_000608_380 0.0927088905 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000920_030 0.1023635705 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_069662_010 0.1068156984 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
5 Hb_003752_070 0.116253986 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
6 Hb_006538_120 0.1212146841 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
7 Hb_000029_110 0.1218519413 - - conserved hypothetical protein [Ricinus communis]
8 Hb_025194_060 0.1223174077 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_001205_300 0.1236065873 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
10 Hb_001623_130 0.1249131154 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000347_040 0.1292101295 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
12 Hb_002184_150 0.1308925184 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_003462_070 0.1320955158 - - arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_000116_190 0.1322320771 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002811_160 0.1335038982 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
16 Hb_000051_060 0.1349585687 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000061_020 0.1360295513 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
18 Hb_001195_270 0.1367012631 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_001541_050 0.1380606349 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
20 Hb_001022_030 0.1381531452 - - PREDICTED: sorting nexin 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_060 Hb_000441_060 Hb_000608_380 Hb_000608_380 Hb_000441_060--Hb_000608_380 Hb_000920_030 Hb_000920_030 Hb_000441_060--Hb_000920_030 Hb_069662_010 Hb_069662_010 Hb_000441_060--Hb_069662_010 Hb_003752_070 Hb_003752_070 Hb_000441_060--Hb_003752_070 Hb_006538_120 Hb_006538_120 Hb_000441_060--Hb_006538_120 Hb_000029_110 Hb_000029_110 Hb_000441_060--Hb_000029_110 Hb_000608_380--Hb_069662_010 Hb_000608_380--Hb_006538_120 Hb_005127_030 Hb_005127_030 Hb_000608_380--Hb_005127_030 Hb_000221_140 Hb_000221_140 Hb_000608_380--Hb_000221_140 Hb_001205_300 Hb_001205_300 Hb_000608_380--Hb_001205_300 Hb_003462_070 Hb_003462_070 Hb_000920_030--Hb_003462_070 Hb_029695_110 Hb_029695_110 Hb_000920_030--Hb_029695_110 Hb_000920_030--Hb_001205_300 Hb_000920_030--Hb_006538_120 Hb_003728_100 Hb_003728_100 Hb_000920_030--Hb_003728_100 Hb_004531_140 Hb_004531_140 Hb_069662_010--Hb_004531_140 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_001541_100 Hb_001541_100 Hb_000029_110--Hb_001541_100 Hb_000108_020 Hb_000108_020 Hb_000029_110--Hb_000108_020 Hb_006006_060 Hb_006006_060 Hb_000029_110--Hb_006006_060 Hb_000309_020 Hb_000309_020 Hb_000029_110--Hb_000309_020 Hb_000480_040 Hb_000480_040 Hb_000029_110--Hb_000480_040 Hb_000116_190 Hb_000116_190 Hb_000029_110--Hb_000116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01652 0.359665 2.10326 1.40178 1.49483 1.38699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00144 1.21651 0.252789 0.555396 2.79946

CAGE analysis