Hb_029695_110

Information

Type -
Description -
Location Contig29695: 87524-93549
Sequence    

Annotation

kegg
ID cic:CICLE_v10021605mg
description hypothetical protein
nr
ID XP_006444064.1
description hypothetical protein CICLE_v10021605mg [Citrus clementina]
swissprot
ID Q9M1X0
description Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=2 SV=2
trembl
ID A0A067FZW6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023857mg PE=3 SV=1
Gene Ontology
ID GO:0009570
description ribosome-recycling chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31069: 87735-93466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029695_110 0.0 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
2 Hb_000920_030 0.086261163 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_001205_300 0.0915571399 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
4 Hb_000959_030 0.0996742229 - - mitochondrial carrier protein, putative [Ricinus communis]
5 Hb_003462_070 0.1014249707 - - arsenical pump-driving atpase, putative [Ricinus communis]
6 Hb_002304_080 0.1018170651 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
7 Hb_000723_100 0.1044972366 - - phosphoglycerate kinase, putative [Ricinus communis]
8 Hb_032202_180 0.104958918 - - PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]
9 Hb_006538_120 0.1058997675 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
10 Hb_031284_070 0.1095179786 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
11 Hb_000740_050 0.1121448042 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
12 Hb_003728_100 0.1145503654 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
13 Hb_000221_140 0.1148704404 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_000224_160 0.1174417381 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_003029_070 0.1186548441 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_005405_020 0.1203980293 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
17 Hb_021346_030 0.1221337679 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
18 Hb_003440_060 0.1224561826 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
19 Hb_006117_040 0.1229291595 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
20 Hb_000227_170 0.123703143 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_029695_110 Hb_029695_110 Hb_000920_030 Hb_000920_030 Hb_029695_110--Hb_000920_030 Hb_001205_300 Hb_001205_300 Hb_029695_110--Hb_001205_300 Hb_000959_030 Hb_000959_030 Hb_029695_110--Hb_000959_030 Hb_003462_070 Hb_003462_070 Hb_029695_110--Hb_003462_070 Hb_002304_080 Hb_002304_080 Hb_029695_110--Hb_002304_080 Hb_000723_100 Hb_000723_100 Hb_029695_110--Hb_000723_100 Hb_000920_030--Hb_003462_070 Hb_000920_030--Hb_001205_300 Hb_006538_120 Hb_006538_120 Hb_000920_030--Hb_006538_120 Hb_003728_100 Hb_003728_100 Hb_000920_030--Hb_003728_100 Hb_000441_060 Hb_000441_060 Hb_000920_030--Hb_000441_060 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_011021_020 Hb_011021_020 Hb_000959_030--Hb_011021_020 Hb_001922_170 Hb_001922_170 Hb_000959_030--Hb_001922_170 Hb_005405_020 Hb_005405_020 Hb_000959_030--Hb_005405_020 Hb_000959_030--Hb_001205_300 Hb_000959_030--Hb_009225_020 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_003462_070--Hb_000740_050 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_000028_110 Hb_000028_110 Hb_002304_080--Hb_000028_110 Hb_005672_020 Hb_005672_020 Hb_002304_080--Hb_005672_020 Hb_002304_080--Hb_006538_120 Hb_158845_050 Hb_158845_050 Hb_002304_080--Hb_158845_050 Hb_021346_030 Hb_021346_030 Hb_002304_080--Hb_021346_030 Hb_003440_060 Hb_003440_060 Hb_000723_100--Hb_003440_060 Hb_002893_070 Hb_002893_070 Hb_000723_100--Hb_002893_070 Hb_004310_140 Hb_004310_140 Hb_000723_100--Hb_004310_140 Hb_000665_160 Hb_000665_160 Hb_000723_100--Hb_000665_160 Hb_000723_100--Hb_000740_050 Hb_000723_100--Hb_000061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1888 7.1338 29.481 12.3807 19.2695 21.6546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4456 13.7365 9.15306 7.74598 35.9381

CAGE analysis