Hb_011021_020

Information

Type -
Description -
Location Contig11021: 13536-20427
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24430g
description POPTRDRAFT_756265; hypothetical protein
nr
ID XP_012085104.1
description PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GQI3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s24430g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03175: 13975-19256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011021_020 0.0 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
2 Hb_002496_020 0.0902231553 - - DNA binding protein, putative [Ricinus communis]
3 Hb_005847_060 0.0941140223 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
4 Hb_000959_030 0.0961463634 - - mitochondrial carrier protein, putative [Ricinus communis]
5 Hb_004191_020 0.0978918561 - - PREDICTED: cysteine synthase [Jatropha curcas]
6 Hb_000193_270 0.1038282102 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
7 Hb_000224_160 0.104612532 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_001348_180 0.1087687541 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
9 Hb_011716_130 0.109374896 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
10 Hb_010583_020 0.1104599646 - - PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
11 Hb_002811_130 0.1110354019 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
12 Hb_000599_300 0.1111273458 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
13 Hb_153533_010 0.1186924748 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
14 Hb_004837_030 0.1195406662 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
15 Hb_054865_120 0.1204891991 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
16 Hb_000479_250 0.121557381 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
17 Hb_001922_170 0.1220274595 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
18 Hb_001439_060 0.1229213346 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
19 Hb_002893_070 0.1230627246 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
20 Hb_001584_200 0.123242888 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]

Gene co-expression network

sample Hb_011021_020 Hb_011021_020 Hb_002496_020 Hb_002496_020 Hb_011021_020--Hb_002496_020 Hb_005847_060 Hb_005847_060 Hb_011021_020--Hb_005847_060 Hb_000959_030 Hb_000959_030 Hb_011021_020--Hb_000959_030 Hb_004191_020 Hb_004191_020 Hb_011021_020--Hb_004191_020 Hb_000193_270 Hb_000193_270 Hb_011021_020--Hb_000193_270 Hb_000224_160 Hb_000224_160 Hb_011021_020--Hb_000224_160 Hb_002496_020--Hb_004191_020 Hb_000479_250 Hb_000479_250 Hb_002496_020--Hb_000479_250 Hb_004531_140 Hb_004531_140 Hb_002496_020--Hb_004531_140 Hb_001369_750 Hb_001369_750 Hb_002496_020--Hb_001369_750 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_001584_200 Hb_001584_200 Hb_002496_020--Hb_001584_200 Hb_011716_130 Hb_011716_130 Hb_005847_060--Hb_011716_130 Hb_001662_150 Hb_001662_150 Hb_005847_060--Hb_001662_150 Hb_001922_170 Hb_001922_170 Hb_005847_060--Hb_001922_170 Hb_002811_130 Hb_002811_130 Hb_005847_060--Hb_002811_130 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_001579_270 Hb_001579_270 Hb_005847_060--Hb_001579_270 Hb_000959_030--Hb_001922_170 Hb_029695_110 Hb_029695_110 Hb_000959_030--Hb_029695_110 Hb_000959_030--Hb_005405_020 Hb_001205_300 Hb_001205_300 Hb_000959_030--Hb_001205_300 Hb_009225_020 Hb_009225_020 Hb_000959_030--Hb_009225_020 Hb_000335_030 Hb_000335_030 Hb_004191_020--Hb_000335_030 Hb_006478_020 Hb_006478_020 Hb_004191_020--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_004191_020--Hb_001971_010 Hb_008790_030 Hb_008790_030 Hb_004191_020--Hb_008790_030 Hb_024128_020 Hb_024128_020 Hb_004191_020--Hb_024128_020 Hb_000599_300 Hb_000599_300 Hb_000193_270--Hb_000599_300 Hb_153533_010 Hb_153533_010 Hb_000193_270--Hb_153533_010 Hb_005078_010 Hb_005078_010 Hb_000193_270--Hb_005078_010 Hb_009117_030 Hb_009117_030 Hb_000193_270--Hb_009117_030 Hb_003633_030 Hb_003633_030 Hb_000193_270--Hb_003633_030 Hb_000224_160--Hb_001584_200 Hb_012022_150 Hb_012022_150 Hb_000224_160--Hb_012022_150 Hb_022693_140 Hb_022693_140 Hb_000224_160--Hb_022693_140 Hb_000224_160--Hb_011716_130 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000184_170 Hb_000184_170 Hb_000224_160--Hb_000184_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.5211 1.26613 4.32899 4.30609 4.63365 7.26046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.85799 5.15406 4.04817 2.69428 8.10403

CAGE analysis