Hb_000700_150

Information

Type -
Description -
Location Contig700: 224054-232051
Sequence    

Annotation

kegg
ID rcu:RCOM_1721100
description hypothetical protein
nr
ID XP_002521109.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S540
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1721100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54805: 223714-232220 , PASA_asmbl_54806: 223771-225852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002769_020 0.0850666926 - - DNA-damage-inducible protein f, putative [Ricinus communis]
3 Hb_002184_150 0.0884138164 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_001205_300 0.1080671958 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
5 Hb_003462_070 0.1103537507 - - arsenical pump-driving atpase, putative [Ricinus communis]
6 Hb_004032_410 0.112404739 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
7 Hb_000061_020 0.1136797526 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
8 Hb_002836_140 0.1139499383 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
9 Hb_004951_070 0.1145579666 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
10 Hb_000915_080 0.1207543334 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
11 Hb_003440_060 0.1209453377 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
12 Hb_000175_590 0.1209920274 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
13 Hb_000365_100 0.1211543259 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
14 Hb_000948_170 0.1216634447 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
15 Hb_008556_030 0.1218431051 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
16 Hb_001604_120 0.1223394835 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
17 Hb_000920_030 0.1225619858 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_008642_040 0.1227978252 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
19 Hb_002750_050 0.1232435187 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
20 Hb_001188_060 0.1238236597 - - -

Gene co-expression network

sample Hb_000700_150 Hb_000700_150 Hb_002769_020 Hb_002769_020 Hb_000700_150--Hb_002769_020 Hb_002184_150 Hb_002184_150 Hb_000700_150--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_000700_150--Hb_001205_300 Hb_003462_070 Hb_003462_070 Hb_000700_150--Hb_003462_070 Hb_004032_410 Hb_004032_410 Hb_000700_150--Hb_004032_410 Hb_000061_020 Hb_000061_020 Hb_000700_150--Hb_000061_020 Hb_001141_410 Hb_001141_410 Hb_002769_020--Hb_001141_410 Hb_000203_230 Hb_000203_230 Hb_002769_020--Hb_000203_230 Hb_000920_030 Hb_000920_030 Hb_002769_020--Hb_000920_030 Hb_002769_020--Hb_003462_070 Hb_000175_590 Hb_000175_590 Hb_002769_020--Hb_000175_590 Hb_069662_010 Hb_069662_010 Hb_002184_150--Hb_069662_010 Hb_163950_030 Hb_163950_030 Hb_002184_150--Hb_163950_030 Hb_002184_150--Hb_001205_300 Hb_003440_060 Hb_003440_060 Hb_002184_150--Hb_003440_060 Hb_008642_040 Hb_008642_040 Hb_002184_150--Hb_008642_040 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_003462_070--Hb_000061_020 Hb_003462_070--Hb_000920_030 Hb_003462_070--Hb_000740_050 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_150651_030 Hb_150651_030 Hb_004032_410--Hb_150651_030 Hb_004032_410--Hb_003440_060 Hb_001489_050 Hb_001489_050 Hb_004032_410--Hb_001489_050 Hb_000544_010 Hb_000544_010 Hb_004032_410--Hb_000544_010 Hb_000076_130 Hb_000076_130 Hb_004032_410--Hb_000076_130 Hb_000915_080 Hb_000915_080 Hb_004032_410--Hb_000915_080 Hb_025557_050 Hb_025557_050 Hb_000061_020--Hb_025557_050 Hb_000061_020--Hb_021943_080 Hb_000723_100 Hb_000723_100 Hb_000061_020--Hb_000723_100 Hb_002304_060 Hb_002304_060 Hb_000061_020--Hb_002304_060 Hb_017151_010 Hb_017151_010 Hb_000061_020--Hb_017151_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.40084 1.48565 8.60874 5.8954 7.91104 8.66799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04413 4.25875 2.91104 2.82948 7.64818

CAGE analysis