Hb_000203_230

Information

Type -
Description -
Location Contig203: 269773-271682
Sequence    

Annotation

kegg
ID rcu:RCOM_0069250
description hypothetical protein
nr
ID XP_012091761.1
description PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
swissprot
ID Q570P7
description Probable inactive dual specificity protein phosphatase-like At4g18593 OS=Arabidopsis thaliana GN=At4g18593 PE=2 SV=1
trembl
ID A0A067LA72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09605 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20807: 269745-271655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_230 0.0 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
2 Hb_002769_020 0.1176673171 - - DNA-damage-inducible protein f, putative [Ricinus communis]
3 Hb_000700_150 0.1301097052 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002079_030 0.1339413495 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
5 Hb_001141_410 0.1375127218 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
6 Hb_004724_460 0.1397068244 - - hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
7 Hb_000948_170 0.142568258 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
8 Hb_003430_090 0.1460971326 - - ATP binding protein, putative [Ricinus communis]
9 Hb_012098_150 0.1480263061 - - ARC5 protein [Manihot esculenta]
10 Hb_000107_210 0.1493962736 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
11 Hb_002184_150 0.1498364099 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_029904_020 0.1534134847 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
13 Hb_000347_040 0.1536411215 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
14 Hb_003462_070 0.1544615269 - - arsenical pump-driving atpase, putative [Ricinus communis]
15 Hb_000015_100 0.1561323323 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_000920_030 0.1572760062 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_000031_280 0.1574104503 - - -
18 Hb_000175_590 0.1590317131 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
19 Hb_013726_080 0.1591026494 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
20 Hb_001021_220 0.1595302891 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000203_230 Hb_000203_230 Hb_002769_020 Hb_002769_020 Hb_000203_230--Hb_002769_020 Hb_000700_150 Hb_000700_150 Hb_000203_230--Hb_000700_150 Hb_002079_030 Hb_002079_030 Hb_000203_230--Hb_002079_030 Hb_001141_410 Hb_001141_410 Hb_000203_230--Hb_001141_410 Hb_004724_460 Hb_004724_460 Hb_000203_230--Hb_004724_460 Hb_000948_170 Hb_000948_170 Hb_000203_230--Hb_000948_170 Hb_002769_020--Hb_000700_150 Hb_002769_020--Hb_001141_410 Hb_000920_030 Hb_000920_030 Hb_002769_020--Hb_000920_030 Hb_003462_070 Hb_003462_070 Hb_002769_020--Hb_003462_070 Hb_000175_590 Hb_000175_590 Hb_002769_020--Hb_000175_590 Hb_002184_150 Hb_002184_150 Hb_000700_150--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_000700_150--Hb_001205_300 Hb_000700_150--Hb_003462_070 Hb_004032_410 Hb_004032_410 Hb_000700_150--Hb_004032_410 Hb_000061_020 Hb_000061_020 Hb_000700_150--Hb_000061_020 Hb_001828_040 Hb_001828_040 Hb_002079_030--Hb_001828_040 Hb_069662_010 Hb_069662_010 Hb_002079_030--Hb_069662_010 Hb_142328_010 Hb_142328_010 Hb_002079_030--Hb_142328_010 Hb_011486_040 Hb_011486_040 Hb_002079_030--Hb_011486_040 Hb_000333_080 Hb_000333_080 Hb_002079_030--Hb_000333_080 Hb_004531_140 Hb_004531_140 Hb_002079_030--Hb_004531_140 Hb_004375_130 Hb_004375_130 Hb_001141_410--Hb_004375_130 Hb_001488_340 Hb_001488_340 Hb_001141_410--Hb_001488_340 Hb_001141_410--Hb_000700_150 Hb_074449_010 Hb_074449_010 Hb_001141_410--Hb_074449_010 Hb_004218_280 Hb_004218_280 Hb_004724_460--Hb_004218_280 Hb_004724_460--Hb_003462_070 Hb_000084_200 Hb_000084_200 Hb_004724_460--Hb_000084_200 Hb_004724_460--Hb_000920_030 Hb_004724_460--Hb_000061_020 Hb_000015_100 Hb_000015_100 Hb_000948_170--Hb_000015_100 Hb_031284_070 Hb_031284_070 Hb_000948_170--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000948_170--Hb_021346_030 Hb_000627_250 Hb_000627_250 Hb_000948_170--Hb_000627_250 Hb_000948_170--Hb_001205_300 Hb_000816_100 Hb_000816_100 Hb_000948_170--Hb_000816_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4224 3.20402 11.4534 11.6998 8.36647 17.1306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44503 4.63943 1.8356 3.353 14.3672

CAGE analysis