Hb_004724_460

Information

Type -
Description -
Location Contig4724: 288193-293280
Sequence    

Annotation

kegg
ID mdm:103407841
description bifunctional nitrilase/nitrile hydratase NIT4B
nr
ID KCW44412.1
description hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
swissprot
ID P40446
description Putative nitrilase-like protein YIL165C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL165C PE=5 SV=1
trembl
ID A0A058ZRK8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L02100 PE=4 SV=1
Gene Ontology
ID GO:0016810
description bifunctional nitrilase nitrile hydratase nit4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_460 0.0 - - hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
2 Hb_004218_280 0.1304190277 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
3 Hb_003462_070 0.1341083641 - - arsenical pump-driving atpase, putative [Ricinus communis]
4 Hb_000203_230 0.1397068244 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
5 Hb_000084_200 0.1420767331 - - PREDICTED: uncharacterized protein LOC105634688 isoform X2 [Jatropha curcas]
6 Hb_000920_030 0.1436829886 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_000061_020 0.1462570836 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
8 Hb_000608_380 0.1463212396 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001205_300 0.1464536847 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
10 Hb_009225_020 0.1468890098 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
11 Hb_000441_060 0.1492636582 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
12 Hb_001541_100 0.1506277774 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
13 Hb_069662_010 0.1507234726 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
14 Hb_011486_040 0.1509294774 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
15 Hb_000046_330 0.1516825009 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
16 Hb_005463_110 0.1517927773 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
17 Hb_000740_050 0.151894806 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
18 Hb_002079_030 0.1523322123 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
19 Hb_000029_110 0.1552883875 - - conserved hypothetical protein [Ricinus communis]
20 Hb_031284_070 0.1553146884 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004724_460 Hb_004724_460 Hb_004218_280 Hb_004218_280 Hb_004724_460--Hb_004218_280 Hb_003462_070 Hb_003462_070 Hb_004724_460--Hb_003462_070 Hb_000203_230 Hb_000203_230 Hb_004724_460--Hb_000203_230 Hb_000084_200 Hb_000084_200 Hb_004724_460--Hb_000084_200 Hb_000920_030 Hb_000920_030 Hb_004724_460--Hb_000920_030 Hb_000061_020 Hb_000061_020 Hb_004724_460--Hb_000061_020 Hb_000740_050 Hb_000740_050 Hb_004218_280--Hb_000740_050 Hb_007441_130 Hb_007441_130 Hb_004218_280--Hb_007441_130 Hb_004218_280--Hb_003462_070 Hb_000076_130 Hb_000076_130 Hb_004218_280--Hb_000076_130 Hb_007919_100 Hb_007919_100 Hb_004218_280--Hb_007919_100 Hb_003438_050 Hb_003438_050 Hb_004218_280--Hb_003438_050 Hb_001205_300 Hb_001205_300 Hb_003462_070--Hb_001205_300 Hb_003462_070--Hb_000061_020 Hb_003462_070--Hb_000920_030 Hb_003462_070--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_002769_020 Hb_002769_020 Hb_000203_230--Hb_002769_020 Hb_000700_150 Hb_000700_150 Hb_000203_230--Hb_000700_150 Hb_002079_030 Hb_002079_030 Hb_000203_230--Hb_002079_030 Hb_001141_410 Hb_001141_410 Hb_000203_230--Hb_001141_410 Hb_000948_170 Hb_000948_170 Hb_000203_230--Hb_000948_170 Hb_005015_060 Hb_005015_060 Hb_000084_200--Hb_005015_060 Hb_001014_110 Hb_001014_110 Hb_000084_200--Hb_001014_110 Hb_000608_380 Hb_000608_380 Hb_000084_200--Hb_000608_380 Hb_005701_060 Hb_005701_060 Hb_000084_200--Hb_005701_060 Hb_000599_200 Hb_000599_200 Hb_000084_200--Hb_000599_200 Hb_029695_110 Hb_029695_110 Hb_000920_030--Hb_029695_110 Hb_000920_030--Hb_001205_300 Hb_006538_120 Hb_006538_120 Hb_000920_030--Hb_006538_120 Hb_003728_100 Hb_003728_100 Hb_000920_030--Hb_003728_100 Hb_000441_060 Hb_000441_060 Hb_000920_030--Hb_000441_060 Hb_025557_050 Hb_025557_050 Hb_000061_020--Hb_025557_050 Hb_000061_020--Hb_021943_080 Hb_000723_100 Hb_000723_100 Hb_000061_020--Hb_000723_100 Hb_002304_060 Hb_002304_060 Hb_000061_020--Hb_002304_060 Hb_017151_010 Hb_017151_010 Hb_000061_020--Hb_017151_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90025 0.335703 1.43663 1.88614 1.23202 1.98011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39874 0.823981 0.224334 1.22095 2.96149

CAGE analysis