Hb_005701_060

Information

Type -
Description -
Location Contig5701: 41441-41731
Sequence    

Annotation

kegg
ID rcu:RCOM_1596520
description hypothetical protein
nr
ID KDP38588.1
description hypothetical protein JCGZ_04513 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04513 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49330: 41424-41830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_060 0.0 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
2 Hb_026745_020 0.1019993345 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
3 Hb_162603_010 0.1218287284 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_001014_110 0.1239644216 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
5 Hb_025194_100 0.1314202841 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
6 Hb_000429_150 0.1400340087 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
7 Hb_004303_040 0.1414727643 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
8 Hb_008447_040 0.142222377 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
9 Hb_002205_210 0.1422231757 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
10 Hb_002994_030 0.145627658 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
11 Hb_054745_010 0.1466152344 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001119_060 0.1473587289 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
13 Hb_000084_200 0.1493135714 - - PREDICTED: uncharacterized protein LOC105634688 isoform X2 [Jatropha curcas]
14 Hb_152371_010 0.1493289648 - - RNA-binding KH domain-containing protein [Theobroma cacao]
15 Hb_001168_020 0.150106068 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
16 Hb_000392_190 0.15050188 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
17 Hb_000038_080 0.1509884584 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
18 Hb_000193_270 0.1514776292 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
19 Hb_007380_060 0.1518982572 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
20 Hb_002218_030 0.152409022 - - hypothetical protein B456_007G345200 [Gossypium raimondii]

Gene co-expression network

sample Hb_005701_060 Hb_005701_060 Hb_026745_020 Hb_026745_020 Hb_005701_060--Hb_026745_020 Hb_162603_010 Hb_162603_010 Hb_005701_060--Hb_162603_010 Hb_001014_110 Hb_001014_110 Hb_005701_060--Hb_001014_110 Hb_025194_100 Hb_025194_100 Hb_005701_060--Hb_025194_100 Hb_000429_150 Hb_000429_150 Hb_005701_060--Hb_000429_150 Hb_004303_040 Hb_004303_040 Hb_005701_060--Hb_004303_040 Hb_004060_030 Hb_004060_030 Hb_026745_020--Hb_004060_030 Hb_026745_020--Hb_004303_040 Hb_000193_270 Hb_000193_270 Hb_026745_020--Hb_000193_270 Hb_026745_020--Hb_162603_010 Hb_026745_020--Hb_025194_100 Hb_007026_040 Hb_007026_040 Hb_162603_010--Hb_007026_040 Hb_162603_010--Hb_000429_150 Hb_099878_030 Hb_099878_030 Hb_162603_010--Hb_099878_030 Hb_000236_310 Hb_000236_310 Hb_162603_010--Hb_000236_310 Hb_000830_030 Hb_000830_030 Hb_162603_010--Hb_000830_030 Hb_000140_280 Hb_000140_280 Hb_162603_010--Hb_000140_280 Hb_005527_020 Hb_005527_020 Hb_001014_110--Hb_005527_020 Hb_004157_100 Hb_004157_100 Hb_001014_110--Hb_004157_100 Hb_000004_020 Hb_000004_020 Hb_001014_110--Hb_000004_020 Hb_000676_080 Hb_000676_080 Hb_001014_110--Hb_000676_080 Hb_054745_010 Hb_054745_010 Hb_001014_110--Hb_054745_010 Hb_006541_040 Hb_006541_040 Hb_001014_110--Hb_006541_040 Hb_002289_080 Hb_002289_080 Hb_025194_100--Hb_002289_080 Hb_152371_010 Hb_152371_010 Hb_025194_100--Hb_152371_010 Hb_000599_300 Hb_000599_300 Hb_025194_100--Hb_000599_300 Hb_000310_090 Hb_000310_090 Hb_025194_100--Hb_000310_090 Hb_002994_030 Hb_002994_030 Hb_025194_100--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_025194_100--Hb_000696_330 Hb_007638_030 Hb_007638_030 Hb_000429_150--Hb_007638_030 Hb_000429_150--Hb_000140_280 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_004567_090 Hb_004567_090 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_002481_060 Hb_002481_060 Hb_004303_040--Hb_002481_060 Hb_004709_020 Hb_004709_020 Hb_004303_040--Hb_004709_020 Hb_002200_040 Hb_002200_040 Hb_004303_040--Hb_002200_040 Hb_004303_040--Hb_000004_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09235 1.281 1.82659 2.65773 0.976085 5.30071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83311 2.8715 0.892621 3.56406 2.90242

CAGE analysis