Hb_004709_020

Information

Type -
Description -
Location Contig4709: 27889-29282
Sequence    

Annotation

kegg
ID rcu:RCOM_1614590
description threonine aspartase, putative (EC:3.5.1.1)
nr
ID XP_012083436.1
description PREDICTED: putative threonine aspartase [Jatropha curcas]
swissprot
ID O65268
description Putative threonine aspartase OS=Arabidopsis thaliana GN=At4g00590 PE=2 SV=3
trembl
ID A0A067KA23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14430 PE=4 SV=1
Gene Ontology
ID GO:0004067
description threonine aspartase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44254: 16255-27970 , PASA_asmbl_44255: 28453-29075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004709_020 0.0 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
2 Hb_004303_040 0.1356519848 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
3 Hb_009270_030 0.1380755861 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
4 Hb_002562_110 0.1404132629 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
5 Hb_082006_010 0.1502483618 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008447_030 0.1524942027 - - -
7 Hb_038237_010 0.1531184502 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
8 Hb_002477_050 0.1533067354 - - unnamed protein product [Coffea canephora]
9 Hb_000074_060 0.1573353451 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
10 Hb_002200_040 0.1575367587 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
11 Hb_129672_010 0.1579963089 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
12 Hb_006153_030 0.1585062228 - - PREDICTED: probable transaldolase [Jatropha curcas]
13 Hb_028420_020 0.1588157676 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
14 Hb_000392_190 0.1591359882 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
15 Hb_000635_070 0.1600299929 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
16 Hb_007943_200 0.1605715403 - - Uncharacterized protein isoform 2 [Theobroma cacao]
17 Hb_005527_020 0.1613785553 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
18 Hb_002168_010 0.1616244483 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
19 Hb_000641_020 0.1627430224 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
20 Hb_090158_010 0.163586467 - - hypothetical protein RCOM_1968400 [Ricinus communis]

Gene co-expression network

sample Hb_004709_020 Hb_004709_020 Hb_004303_040 Hb_004303_040 Hb_004709_020--Hb_004303_040 Hb_009270_030 Hb_009270_030 Hb_004709_020--Hb_009270_030 Hb_002562_110 Hb_002562_110 Hb_004709_020--Hb_002562_110 Hb_082006_010 Hb_082006_010 Hb_004709_020--Hb_082006_010 Hb_008447_030 Hb_008447_030 Hb_004709_020--Hb_008447_030 Hb_038237_010 Hb_038237_010 Hb_004709_020--Hb_038237_010 Hb_026745_020 Hb_026745_020 Hb_004303_040--Hb_026745_020 Hb_002481_060 Hb_002481_060 Hb_004303_040--Hb_002481_060 Hb_002200_040 Hb_002200_040 Hb_004303_040--Hb_002200_040 Hb_000004_020 Hb_000004_020 Hb_004303_040--Hb_000004_020 Hb_005701_060 Hb_005701_060 Hb_004303_040--Hb_005701_060 Hb_000635_070 Hb_000635_070 Hb_009270_030--Hb_000635_070 Hb_009270_030--Hb_082006_010 Hb_129672_010 Hb_129672_010 Hb_009270_030--Hb_129672_010 Hb_009270_030--Hb_002562_110 Hb_030982_020 Hb_030982_020 Hb_009270_030--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_009270_030--Hb_011214_100 Hb_002562_110--Hb_082006_010 Hb_002562_110--Hb_000635_070 Hb_002078_260 Hb_002078_260 Hb_002562_110--Hb_002078_260 Hb_004669_030 Hb_004669_030 Hb_002562_110--Hb_004669_030 Hb_000016_060 Hb_000016_060 Hb_002562_110--Hb_000016_060 Hb_082006_010--Hb_000635_070 Hb_082006_010--Hb_002078_260 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_000656_090 Hb_000656_090 Hb_008447_030--Hb_000656_090 Hb_008447_030--Hb_026745_020 Hb_006274_040 Hb_006274_040 Hb_008447_030--Hb_006274_040 Hb_008447_030--Hb_002200_040 Hb_000160_160 Hb_000160_160 Hb_008447_030--Hb_000160_160 Hb_008447_040 Hb_008447_040 Hb_008447_030--Hb_008447_040 Hb_152554_010 Hb_152554_010 Hb_038237_010--Hb_152554_010 Hb_000825_030 Hb_000825_030 Hb_038237_010--Hb_000825_030 Hb_076875_020 Hb_076875_020 Hb_038237_010--Hb_076875_020 Hb_038237_010--Hb_129672_010 Hb_005527_020 Hb_005527_020 Hb_038237_010--Hb_005527_020 Hb_000676_080 Hb_000676_080 Hb_038237_010--Hb_000676_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.223939 0.29762 0.766197 3.30676 0.745356 3.66156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97737 1.47219 0.570445 1.81345 1.26206

CAGE analysis