Hb_000160_160

Information

Type -
Description -
Location Contig160: 148833-150198
Sequence    

Annotation

kegg
ID mdm:103407329
description ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like
nr
ID XP_012089922.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRQ3
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_02507 PE=3 SV=1
Gene Ontology
ID GO:0016787
description atp-dependent clp protease proteolytic subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14317: 135209-150073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_160 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
2 Hb_002200_050 0.1225682078 - - unknown [Lotus japonicus]
3 Hb_000656_090 0.1273816639 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
4 Hb_012627_020 0.1274099168 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
5 Hb_008447_030 0.1432604126 - - -
6 Hb_000329_560 0.1752508018 - - conserved hypothetical protein [Ricinus communis]
7 Hb_025190_010 0.1837652881 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004060_030 0.1863889254 - - PREDICTED: primase homolog protein [Jatropha curcas]
9 Hb_003688_110 0.1876205759 - - -
10 Hb_000181_150 0.1891518761 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
11 Hb_026745_020 0.1914877207 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
12 Hb_004709_020 0.1949624488 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
13 Hb_026228_010 0.1952452761 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005679_070 0.1967270361 - - hypothetical protein M569_07741, partial [Genlisea aurea]
15 Hb_004303_040 0.1974303844 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
16 Hb_005085_030 0.2093196945 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
17 Hb_002815_070 0.2115055623 - - hypothetical protein PHAVU_005G048300g [Phaseolus vulgaris]
18 Hb_004448_090 0.2120794968 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
19 Hb_008447_040 0.213797993 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
20 Hb_002200_040 0.2158189657 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_160 Hb_000160_160 Hb_002200_050 Hb_002200_050 Hb_000160_160--Hb_002200_050 Hb_000656_090 Hb_000656_090 Hb_000160_160--Hb_000656_090 Hb_012627_020 Hb_012627_020 Hb_000160_160--Hb_012627_020 Hb_008447_030 Hb_008447_030 Hb_000160_160--Hb_008447_030 Hb_000329_560 Hb_000329_560 Hb_000160_160--Hb_000329_560 Hb_025190_010 Hb_025190_010 Hb_000160_160--Hb_025190_010 Hb_003688_110 Hb_003688_110 Hb_002200_050--Hb_003688_110 Hb_002200_050--Hb_025190_010 Hb_002200_050--Hb_008447_030 Hb_025288_010 Hb_025288_010 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020 Hb_000656_090--Hb_008447_030 Hb_000656_090--Hb_012627_020 Hb_003030_030 Hb_003030_030 Hb_000656_090--Hb_003030_030 Hb_008447_040 Hb_008447_040 Hb_000656_090--Hb_008447_040 Hb_026745_020 Hb_026745_020 Hb_000656_090--Hb_026745_020 Hb_004333_050 Hb_004333_050 Hb_012627_020--Hb_004333_050 Hb_127552_060 Hb_127552_060 Hb_012627_020--Hb_127552_060 Hb_012627_020--Hb_008447_040 Hb_012627_020--Hb_008447_030 Hb_008447_030--Hb_026745_020 Hb_006274_040 Hb_006274_040 Hb_008447_030--Hb_006274_040 Hb_002200_040 Hb_002200_040 Hb_008447_030--Hb_002200_040 Hb_008447_030--Hb_008447_040 Hb_005679_070 Hb_005679_070 Hb_000329_560--Hb_005679_070 Hb_026228_010 Hb_026228_010 Hb_000329_560--Hb_026228_010 Hb_000074_060 Hb_000074_060 Hb_000329_560--Hb_000074_060 Hb_005085_030 Hb_005085_030 Hb_000329_560--Hb_005085_030 Hb_004060_030 Hb_004060_030 Hb_000329_560--Hb_004060_030 Hb_006663_090 Hb_006663_090 Hb_000329_560--Hb_006663_090 Hb_025190_010--Hb_003688_110 Hb_002482_040 Hb_002482_040 Hb_025190_010--Hb_002482_040 Hb_000174_040 Hb_000174_040 Hb_025190_010--Hb_000174_040 Hb_025190_010--Hb_026228_010 Hb_029142_020 Hb_029142_020 Hb_025190_010--Hb_029142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28237 0.644986 1.39758 11.3511 1.76301 29.9171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8458 8.23337 4.62533 10.8409 15.5068

CAGE analysis