Hb_026228_010

Information

Type -
Description -
Location Contig26228: 5519-6250
Sequence    

Annotation

kegg
ID rcu:RCOM_1316920
description hypothetical protein
nr
ID XP_002518998.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZ29
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1316920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27415: 4528-17587 , PASA_asmbl_27416: 4528-17587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026228_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_560 0.1243256339 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005679_070 0.1376736799 - - hypothetical protein M569_07741, partial [Genlisea aurea]
4 Hb_001998_140 0.1618394386 - - -
5 Hb_003688_110 0.1642226815 - - -
6 Hb_002200_050 0.1733511793 - - unknown [Lotus japonicus]
7 Hb_000810_020 0.1753975856 - - -
8 Hb_025190_010 0.175686001 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006663_090 0.1781111921 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
10 Hb_008447_030 0.1788565011 - - -
11 Hb_002815_050 0.1789182726 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
12 Hb_002482_060 0.1797856153 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
13 Hb_002078_500 0.180328775 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006274_040 0.183949115 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
15 Hb_005085_030 0.1872995217 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
16 Hb_007763_060 0.1941940829 - - BnaA02g23510D [Brassica napus]
17 Hb_000160_160 0.1952452761 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
18 Hb_002562_110 0.1957047572 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
19 Hb_013691_010 0.1957182133 - - PREDICTED: uncharacterized protein LOC103724099, partial [Phoenix dactylifera]
20 Hb_009780_070 0.1961597206 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_026228_010 Hb_026228_010 Hb_000329_560 Hb_000329_560 Hb_026228_010--Hb_000329_560 Hb_005679_070 Hb_005679_070 Hb_026228_010--Hb_005679_070 Hb_001998_140 Hb_001998_140 Hb_026228_010--Hb_001998_140 Hb_003688_110 Hb_003688_110 Hb_026228_010--Hb_003688_110 Hb_002200_050 Hb_002200_050 Hb_026228_010--Hb_002200_050 Hb_000810_020 Hb_000810_020 Hb_026228_010--Hb_000810_020 Hb_000329_560--Hb_005679_070 Hb_000074_060 Hb_000074_060 Hb_000329_560--Hb_000074_060 Hb_005085_030 Hb_005085_030 Hb_000329_560--Hb_005085_030 Hb_004060_030 Hb_004060_030 Hb_000329_560--Hb_004060_030 Hb_006663_090 Hb_006663_090 Hb_000329_560--Hb_006663_090 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_005679_070--Hb_001998_140 Hb_005679_070--Hb_005085_030 Hb_068014_010 Hb_068014_010 Hb_005679_070--Hb_068014_010 Hb_005679_070--Hb_006663_090 Hb_006198_090 Hb_006198_090 Hb_001998_140--Hb_006198_090 Hb_007188_030 Hb_007188_030 Hb_001998_140--Hb_007188_030 Hb_002482_060 Hb_002482_060 Hb_001998_140--Hb_002482_060 Hb_010565_040 Hb_010565_040 Hb_001998_140--Hb_010565_040 Hb_025190_010 Hb_025190_010 Hb_003688_110--Hb_025190_010 Hb_003688_110--Hb_002200_050 Hb_007763_060 Hb_007763_060 Hb_003688_110--Hb_007763_060 Hb_041205_010 Hb_041205_010 Hb_003688_110--Hb_041205_010 Hb_004235_030 Hb_004235_030 Hb_003688_110--Hb_004235_030 Hb_003688_110--Hb_005085_030 Hb_000160_160 Hb_000160_160 Hb_002200_050--Hb_000160_160 Hb_002200_050--Hb_025190_010 Hb_008447_030 Hb_008447_030 Hb_002200_050--Hb_008447_030 Hb_025288_010 Hb_025288_010 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020 Hb_002783_060 Hb_002783_060 Hb_000810_020--Hb_002783_060 Hb_000810_020--Hb_002482_060 Hb_000810_020--Hb_006198_090 Hb_000810_020--Hb_005679_070 Hb_005731_140 Hb_005731_140 Hb_000810_020--Hb_005731_140 Hb_000810_020--Hb_005085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10688 2.58414 0.640226 25.4584 4.79998 41.9253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.48025 12.1522 8.58773 5.17964 15.4815

CAGE analysis