Hb_000810_020

Information

Type -
Description -
Location Contig810: 49451-66680
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000810_020 0.0 - - -
2 Hb_002783_060 0.1173942424 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
3 Hb_002482_060 0.1390586805 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
4 Hb_006198_090 0.1416597258 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
5 Hb_005679_070 0.1435571512 - - hypothetical protein M569_07741, partial [Genlisea aurea]
6 Hb_005731_140 0.1453194038 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
7 Hb_005085_030 0.146651924 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
8 Hb_006846_140 0.1555649157 - - conserved hypothetical protein [Ricinus communis]
9 Hb_166480_010 0.1625336989 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
10 Hb_000120_190 0.1655589914 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
11 Hb_001998_140 0.1684673436 - - -
12 Hb_003688_110 0.1688369974 - - -
13 Hb_177103_010 0.1708563014 - - PREDICTED: histone H2AX [Elaeis guineensis]
14 Hb_000329_560 0.1736170948 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001260_030 0.1751159036 - - conserved hypothetical protein [Ricinus communis]
16 Hb_026228_010 0.1753975856 - - conserved hypothetical protein [Ricinus communis]
17 Hb_169170_010 0.1760014888 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
18 Hb_007763_050 0.1792167775 - - hypothetical protein L484_012752 [Morus notabilis]
19 Hb_007188_030 0.1817087894 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
20 Hb_010565_040 0.1820280381 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000810_020 Hb_000810_020 Hb_002783_060 Hb_002783_060 Hb_000810_020--Hb_002783_060 Hb_002482_060 Hb_002482_060 Hb_000810_020--Hb_002482_060 Hb_006198_090 Hb_006198_090 Hb_000810_020--Hb_006198_090 Hb_005679_070 Hb_005679_070 Hb_000810_020--Hb_005679_070 Hb_005731_140 Hb_005731_140 Hb_000810_020--Hb_005731_140 Hb_005085_030 Hb_005085_030 Hb_000810_020--Hb_005085_030 Hb_002960_050 Hb_002960_050 Hb_002783_060--Hb_002960_050 Hb_006846_140 Hb_006846_140 Hb_002783_060--Hb_006846_140 Hb_002783_060--Hb_005085_030 Hb_002783_060--Hb_005731_140 Hb_007124_010 Hb_007124_010 Hb_002783_060--Hb_007124_010 Hb_000120_190 Hb_000120_190 Hb_002482_060--Hb_000120_190 Hb_002482_060--Hb_005731_140 Hb_166480_010 Hb_166480_010 Hb_002482_060--Hb_166480_010 Hb_002482_060--Hb_006198_090 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_003656_150 Hb_003656_150 Hb_006198_090--Hb_003656_150 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_007188_030 Hb_007188_030 Hb_006198_090--Hb_007188_030 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_005679_070--Hb_001998_140 Hb_005679_070--Hb_005085_030 Hb_068014_010 Hb_068014_010 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090 Hb_032531_060 Hb_032531_060 Hb_005731_140--Hb_032531_060 Hb_005731_140--Hb_106005_010 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_005085_030--Hb_166480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.895279 0 0.114529 4.06179 0.934875 11.7966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65618 2.09018 1.52314 1.0808 1.65809

CAGE analysis