Hb_124141_010

Information

Type -
Description -
Location Contig124141: 427-997
Sequence    

Annotation

kegg
ID rcu:RCOM_1248790
description plant origin recognition complex subunit, putative
nr
ID XP_002527745.1
description plant origin recognition complex subunit, putative [Ricinus communis]
swissprot
ID Q10QS7
description Origin of replication complex subunit 2 OS=Oryza sativa subsp. japonica GN=ORC2 PE=2 SV=1
trembl
ID B9SP26
description Plant origin recognition complex subunit, putative OS=Ricinus communis GN=RCOM_1248790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07332: 477-949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124141_010 0.0 - - plant origin recognition complex subunit, putative [Ricinus communis]
2 Hb_005731_140 0.1340539327 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
3 Hb_003029_100 0.1564227096 - - -
4 Hb_166480_010 0.1616378337 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
5 Hb_032531_060 0.1617147702 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
6 Hb_034579_010 0.1630047827 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
7 Hb_002482_060 0.167198769 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
8 Hb_168737_010 0.177989076 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_106005_010 0.1787278095 - - EG5651 [Manihot esculenta]
10 Hb_006198_090 0.182655125 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
11 Hb_000204_020 0.1829752206 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
12 Hb_000086_190 0.1842805217 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
13 Hb_000289_080 0.1859282586 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006995_010 0.1906403132 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
15 Hb_000810_020 0.1914851729 - - -
16 Hb_000120_190 0.1985536998 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
17 Hb_001998_140 0.199863782 - - -
18 Hb_169170_010 0.201688424 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
19 Hb_000127_090 0.2064206755 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003581_010 0.2107420639 - - hypothetical protein VITISV_004687 [Vitis vinifera]

Gene co-expression network

sample Hb_124141_010 Hb_124141_010 Hb_005731_140 Hb_005731_140 Hb_124141_010--Hb_005731_140 Hb_003029_100 Hb_003029_100 Hb_124141_010--Hb_003029_100 Hb_166480_010 Hb_166480_010 Hb_124141_010--Hb_166480_010 Hb_032531_060 Hb_032531_060 Hb_124141_010--Hb_032531_060 Hb_034579_010 Hb_034579_010 Hb_124141_010--Hb_034579_010 Hb_002482_060 Hb_002482_060 Hb_124141_010--Hb_002482_060 Hb_005731_140--Hb_032531_060 Hb_005731_140--Hb_002482_060 Hb_106005_010 Hb_106005_010 Hb_005731_140--Hb_106005_010 Hb_005731_140--Hb_034579_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_000289_080 Hb_000289_080 Hb_003029_100--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_003029_100--Hb_006995_010 Hb_003656_150 Hb_003656_150 Hb_003029_100--Hb_003656_150 Hb_000086_190 Hb_000086_190 Hb_003029_100--Hb_000086_190 Hb_006198_090 Hb_006198_090 Hb_003029_100--Hb_006198_090 Hb_166480_010--Hb_002482_060 Hb_001396_250 Hb_001396_250 Hb_166480_010--Hb_001396_250 Hb_000120_190 Hb_000120_190 Hb_166480_010--Hb_000120_190 Hb_000015_070 Hb_000015_070 Hb_166480_010--Hb_000015_070 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_032531_060--Hb_034579_010 Hb_061581_010 Hb_061581_010 Hb_032531_060--Hb_061581_010 Hb_000248_030 Hb_000248_030 Hb_032531_060--Hb_000248_030 Hb_005933_010 Hb_005933_010 Hb_032531_060--Hb_005933_010 Hb_000002_030 Hb_000002_030 Hb_034579_010--Hb_000002_030 Hb_034579_010--Hb_005933_010 Hb_168737_010 Hb_168737_010 Hb_034579_010--Hb_168737_010 Hb_002482_060--Hb_000120_190 Hb_002482_060--Hb_006198_090 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.08166 1.1496 0.924553 21.4695 1.39166 91.3815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2693 23.9599 8.00148 1.8922 4.3208

CAGE analysis