Hb_005731_140

Information

Type -
Description -
Location Contig5731: 185633-185857
Sequence    

Annotation

kegg
ID cic:CICLE_v10010105mg
description hypothetical protein
nr
ID KDP41790.1
description hypothetical protein JCGZ_26808 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26808 PE=4 SV=1
Gene Ontology
ID GO:0005747
description pre t-cell antigen receptor alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49500: 180129-185926
cDNA
(Sanger)
(ID:Location)		 027_P24.ab1: 180129-185924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_140 0.0 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
2 Hb_032531_060 0.1145780929 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
3 Hb_002482_060 0.1161127987 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
4 Hb_106005_010 0.1251189792 - - EG5651 [Manihot esculenta]
5 Hb_124141_010 0.1340539327 - - plant origin recognition complex subunit, putative [Ricinus communis]
6 Hb_034579_010 0.1431126302 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
7 Hb_000810_020 0.1453194038 - - -
8 Hb_002783_060 0.1508723553 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
9 Hb_006198_090 0.1572593462 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
10 Hb_000120_190 0.1580006456 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
11 Hb_166480_010 0.1631216563 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
12 Hb_168737_010 0.1693786289 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_002960_050 0.1708457891 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
14 Hb_007124_010 0.1743043647 - - unnamed protein product [Coffea canephora]
15 Hb_073559_010 0.1771213875 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
16 Hb_169170_010 0.1802781472 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
17 Hb_005085_030 0.1853201104 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
18 Hb_032225_020 0.1884666388 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
19 Hb_001260_030 0.1887968616 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000127_090 0.1897813106 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005731_140 Hb_005731_140 Hb_032531_060 Hb_032531_060 Hb_005731_140--Hb_032531_060 Hb_002482_060 Hb_002482_060 Hb_005731_140--Hb_002482_060 Hb_106005_010 Hb_106005_010 Hb_005731_140--Hb_106005_010 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_032531_060--Hb_034579_010 Hb_061581_010 Hb_061581_010 Hb_032531_060--Hb_061581_010 Hb_032531_060--Hb_124141_010 Hb_000248_030 Hb_000248_030 Hb_032531_060--Hb_000248_030 Hb_005933_010 Hb_005933_010 Hb_032531_060--Hb_005933_010 Hb_000120_190 Hb_000120_190 Hb_002482_060--Hb_000120_190 Hb_166480_010 Hb_166480_010 Hb_002482_060--Hb_166480_010 Hb_006198_090 Hb_006198_090 Hb_002482_060--Hb_006198_090 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_000001_040 Hb_000001_040 Hb_106005_010--Hb_000001_040 Hb_005965_010 Hb_005965_010 Hb_106005_010--Hb_005965_010 Hb_007188_020 Hb_007188_020 Hb_106005_010--Hb_007188_020 Hb_136731_010 Hb_136731_010 Hb_106005_010--Hb_136731_010 Hb_003029_100 Hb_003029_100 Hb_124141_010--Hb_003029_100 Hb_124141_010--Hb_166480_010 Hb_124141_010--Hb_034579_010 Hb_124141_010--Hb_002482_060 Hb_000002_030 Hb_000002_030 Hb_034579_010--Hb_000002_030 Hb_034579_010--Hb_005933_010 Hb_168737_010 Hb_168737_010 Hb_034579_010--Hb_168737_010 Hb_002783_060 Hb_002783_060 Hb_000810_020--Hb_002783_060 Hb_000810_020--Hb_002482_060 Hb_000810_020--Hb_006198_090 Hb_005679_070 Hb_005679_070 Hb_000810_020--Hb_005679_070 Hb_005085_030 Hb_005085_030 Hb_000810_020--Hb_005085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.1771 24.0793 34.1124 306.902 99.7259 1717.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
325.587 328.663 255.828 61.2188 103.738

CAGE analysis