Hb_136731_010

Information

Type -
Description -
Location Contig136731: 5033-6231
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01970g
description POPTRDRAFT_562237; hypothetical protein
nr
ID XP_012065161.1
description PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20845 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136731_010 0.0 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
2 Hb_001377_180 0.0979651435 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
3 Hb_005054_070 0.1119372118 - - unnamed protein product [Vitis vinifera]
4 Hb_000155_180 0.1172325323 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
5 Hb_000812_040 0.1228650977 - - zinc finger family protein [Populus trichocarpa]
6 Hb_006502_080 0.1236523509 - - -
7 Hb_005367_010 0.1265722254 - - -
8 Hb_000176_120 0.1270786965 - - seryl-tRNA synthetase, putative [Ricinus communis]
9 Hb_152554_010 0.1276589618 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
10 Hb_000001_040 0.1303430495 - - unnamed protein product [Coffea canephora]
11 Hb_032927_010 0.1320916535 - - -
12 Hb_003919_010 0.133743812 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000080_060 0.1343033465 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
14 Hb_006487_060 0.135707705 - - Defective in cullin neddylation protein, putative [Ricinus communis]
15 Hb_073367_010 0.1372153522 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
16 Hb_007012_020 0.1375882391 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
17 Hb_106005_010 0.1419191411 - - EG5651 [Manihot esculenta]
18 Hb_004117_180 0.1422519187 - - -
19 Hb_005714_130 0.1428434798 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
20 Hb_000771_100 0.144608271 - - Os06g0527300 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_136731_010 Hb_136731_010 Hb_001377_180 Hb_001377_180 Hb_136731_010--Hb_001377_180 Hb_005054_070 Hb_005054_070 Hb_136731_010--Hb_005054_070 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_000812_040 Hb_000812_040 Hb_136731_010--Hb_000812_040 Hb_006502_080 Hb_006502_080 Hb_136731_010--Hb_006502_080 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010 Hb_001377_180--Hb_000155_180 Hb_000771_100 Hb_000771_100 Hb_001377_180--Hb_000771_100 Hb_002374_020 Hb_002374_020 Hb_001377_180--Hb_002374_020 Hb_003994_270 Hb_003994_270 Hb_001377_180--Hb_003994_270 Hb_003011_040 Hb_003011_040 Hb_001377_180--Hb_003011_040 Hb_000176_120 Hb_000176_120 Hb_005054_070--Hb_000176_120 Hb_032496_030 Hb_032496_030 Hb_005054_070--Hb_032496_030 Hb_000001_040 Hb_000001_040 Hb_005054_070--Hb_000001_040 Hb_004241_040 Hb_004241_040 Hb_005054_070--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_005054_070--Hb_144898_010 Hb_000155_180--Hb_000771_100 Hb_000155_180--Hb_003011_040 Hb_004502_020 Hb_004502_020 Hb_000155_180--Hb_004502_020 Hb_086703_010 Hb_086703_010 Hb_000155_180--Hb_086703_010 Hb_002272_260 Hb_002272_260 Hb_000155_180--Hb_002272_260 Hb_032927_010 Hb_032927_010 Hb_000812_040--Hb_032927_010 Hb_067776_010 Hb_067776_010 Hb_000812_040--Hb_067776_010 Hb_152554_010 Hb_152554_010 Hb_000812_040--Hb_152554_010 Hb_000812_040--Hb_006502_080 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_006502_080--Hb_032927_010 Hb_007012_020 Hb_007012_020 Hb_006502_080--Hb_007012_020 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_005367_010--Hb_001377_180 Hb_005367_010--Hb_152554_010 Hb_007441_270 Hb_007441_270 Hb_005367_010--Hb_007441_270 Hb_003861_040 Hb_003861_040 Hb_005367_010--Hb_003861_040 Hb_005367_010--Hb_000176_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8738 11.0338 22.8276 51.2262 36.715 173.05
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.6746 69.2522 25.4008 15.9024 14.6045

CAGE analysis