Hb_006502_080

Information

Type -
Description -
Location Contig6502: 69193-72207
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005829
description mrna turnover protein 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_080 0.0 - - -
2 Hb_032927_010 0.0867208334 - - -
3 Hb_000812_040 0.1076403695 - - zinc finger family protein [Populus trichocarpa]
4 Hb_007012_020 0.1160313678 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
5 Hb_136731_010 0.1236523509 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
6 Hb_067776_010 0.1253852735 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
7 Hb_000329_770 0.125948435 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009543_030 0.1306541489 - - prefoldin subunit 1 [Jatropha curcas]
9 Hb_000380_010 0.1348199438 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
10 Hb_007317_060 0.14246098 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
11 Hb_000648_030 0.1434519389 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
12 Hb_001054_130 0.1447382451 - - Protein SSU72, putative [Ricinus communis]
13 Hb_000364_150 0.1476704735 - - -
14 Hb_002197_030 0.1486145009 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
15 Hb_003687_020 0.1490605776 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
16 Hb_002259_150 0.1513159612 - - BnaC04g40780D [Brassica napus]
17 Hb_106005_010 0.1540300023 - - EG5651 [Manihot esculenta]
18 Hb_015057_010 0.1541358566 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
19 Hb_008173_120 0.1541507507 - - conserved hypothetical protein [Ricinus communis]
20 Hb_022250_130 0.1544894348 - - inositol hexaphosphate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006502_080 Hb_006502_080 Hb_032927_010 Hb_032927_010 Hb_006502_080--Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_006502_080--Hb_000812_040 Hb_007012_020 Hb_007012_020 Hb_006502_080--Hb_007012_020 Hb_136731_010 Hb_136731_010 Hb_006502_080--Hb_136731_010 Hb_067776_010 Hb_067776_010 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_032927_010--Hb_000812_040 Hb_032927_010--Hb_067776_010 Hb_007188_020 Hb_007188_020 Hb_032927_010--Hb_007188_020 Hb_152554_010 Hb_152554_010 Hb_032927_010--Hb_152554_010 Hb_032927_010--Hb_136731_010 Hb_000812_040--Hb_067776_010 Hb_000812_040--Hb_152554_010 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_000380_010 Hb_000380_010 Hb_007012_020--Hb_000380_010 Hb_009543_030 Hb_009543_030 Hb_007012_020--Hb_009543_030 Hb_005656_050 Hb_005656_050 Hb_007012_020--Hb_005656_050 Hb_007012_020--Hb_067776_010 Hb_000684_230 Hb_000684_230 Hb_007012_020--Hb_000684_230 Hb_001377_180 Hb_001377_180 Hb_136731_010--Hb_001377_180 Hb_005054_070 Hb_005054_070 Hb_136731_010--Hb_005054_070 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_136731_010--Hb_000812_040 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010 Hb_007441_270 Hb_007441_270 Hb_067776_010--Hb_007441_270 Hb_000648_030 Hb_000648_030 Hb_067776_010--Hb_000648_030 Hb_012675_070 Hb_012675_070 Hb_067776_010--Hb_012675_070 Hb_000003_730 Hb_000003_730 Hb_067776_010--Hb_000003_730 Hb_015057_010 Hb_015057_010 Hb_000329_770--Hb_015057_010 Hb_011016_090 Hb_011016_090 Hb_000329_770--Hb_011016_090 Hb_002259_150 Hb_002259_150 Hb_000329_770--Hb_002259_150 Hb_000329_770--Hb_000380_010 Hb_028639_050 Hb_028639_050 Hb_000329_770--Hb_028639_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250155 0.101284 0.217874 0.233113 0.31326 1.70143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.554929 0.726963 0.38465 0.326839 0.141974

CAGE analysis