Hb_005656_050

Information

Type -
Description -
Location Contig5656: 31779-35965
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15980g
description POPTRDRAFT_863345; hypothetical protein
nr
ID XP_012076315.1
description PREDICTED: protein FAM32A-like [Jatropha curcas]
swissprot
ID B2RYG1
description Protein FAM32A OS=Rattus norvegicus GN=Fam32a PE=3 SV=1
trembl
ID B9H7C0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49010: 31508-35947 , PASA_asmbl_49011: 31581-35919 , PASA_asmbl_49012: 34732-35247
cDNA
(Sanger)
(ID:Location)		 010_B20.ab1: 31628-35946 , 013_G13.ab1: 31570-35946 , 028_P07.ab1: 31572-35946 , 033_N20.ab1: 31639-35947 , 046_D07.ab1: 31581-35948 , 047_C18.ab1: 31640-35948

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_050 0.0 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
2 Hb_000380_010 0.1119599314 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
3 Hb_007012_020 0.1230067608 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
4 Hb_007317_060 0.1260473599 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
5 Hb_022092_090 0.1267009556 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
6 Hb_005117_010 0.1281398014 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
7 Hb_000963_190 0.130389717 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
8 Hb_008173_120 0.1311469922 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000144_090 0.1332428488 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
10 Hb_000230_540 0.1333346023 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
11 Hb_004448_020 0.1352336341 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
12 Hb_002539_090 0.1377959046 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
13 Hb_000329_770 0.1389285384 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001437_230 0.13898138 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
15 Hb_001357_080 0.1390484017 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
16 Hb_000751_130 0.1408546769 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
17 Hb_002259_150 0.1410709665 - - BnaC04g40780D [Brassica napus]
18 Hb_011671_220 0.1411481093 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000648_030 0.1438005155 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
20 Hb_000684_230 0.144431852 - - 40S ribosomal protein S23, putative [Ricinus communis]

Gene co-expression network

sample Hb_005656_050 Hb_005656_050 Hb_000380_010 Hb_000380_010 Hb_005656_050--Hb_000380_010 Hb_007012_020 Hb_007012_020 Hb_005656_050--Hb_007012_020 Hb_007317_060 Hb_007317_060 Hb_005656_050--Hb_007317_060 Hb_022092_090 Hb_022092_090 Hb_005656_050--Hb_022092_090 Hb_005117_010 Hb_005117_010 Hb_005656_050--Hb_005117_010 Hb_000963_190 Hb_000963_190 Hb_005656_050--Hb_000963_190 Hb_000380_010--Hb_007317_060 Hb_008173_120 Hb_008173_120 Hb_000380_010--Hb_008173_120 Hb_000380_010--Hb_005117_010 Hb_015057_010 Hb_015057_010 Hb_000380_010--Hb_015057_010 Hb_009543_030 Hb_009543_030 Hb_000380_010--Hb_009543_030 Hb_000380_010--Hb_007012_020 Hb_006502_080 Hb_006502_080 Hb_007012_020--Hb_006502_080 Hb_007012_020--Hb_009543_030 Hb_067776_010 Hb_067776_010 Hb_007012_020--Hb_067776_010 Hb_000684_230 Hb_000684_230 Hb_007012_020--Hb_000684_230 Hb_002259_150 Hb_002259_150 Hb_007317_060--Hb_002259_150 Hb_007317_060--Hb_008173_120 Hb_007317_060--Hb_000684_230 Hb_000648_030 Hb_000648_030 Hb_007317_060--Hb_000648_030 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020 Hb_022092_090--Hb_000963_190 Hb_011671_220 Hb_011671_220 Hb_022092_090--Hb_011671_220 Hb_001019_060 Hb_001019_060 Hb_022092_090--Hb_001019_060 Hb_029510_140 Hb_029510_140 Hb_022092_090--Hb_029510_140 Hb_000364_150 Hb_000364_150 Hb_022092_090--Hb_000364_150 Hb_022092_090--Hb_005117_010 Hb_005117_010--Hb_011671_220 Hb_000230_540 Hb_000230_540 Hb_005117_010--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_005117_010--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_005117_010--Hb_006641_010 Hb_010436_060 Hb_010436_060 Hb_005117_010--Hb_010436_060 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070 Hb_007101_100 Hb_007101_100 Hb_000963_190--Hb_007101_100 Hb_000676_290 Hb_000676_290 Hb_000963_190--Hb_000676_290 Hb_001235_070 Hb_001235_070 Hb_000963_190--Hb_001235_070 Hb_007193_100 Hb_007193_100 Hb_000963_190--Hb_007193_100 Hb_001454_140 Hb_001454_140 Hb_000963_190--Hb_001454_140 Hb_071130_030 Hb_071130_030 Hb_000963_190--Hb_071130_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.878 16.4495 12.9371 55.0993 97.5131 293.542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.879 202.613 141.21 28.7344 61.256

CAGE analysis