Hb_140291_010

Information

Type -
Description -
Location Contig140291: 202-797
Sequence    

Annotation

kegg
ID rcu:RCOM_0742410
description nucleic acid binding protein, putative (EC:3.1.2.15)
nr
ID KDP45615.1
description hypothetical protein JCGZ_17222 [Jatropha curcas]
swissprot
ID Q3U0V1
description Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2
trembl
ID A0A067LLH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17222 PE=4 SV=1
Gene Ontology
ID GO:0003723
description far upstream element-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140291_010 0.0 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
2 Hb_096490_020 0.0891044965 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
3 Hb_041392_010 0.0995212188 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
4 Hb_002007_180 0.1029058819 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
5 Hb_000416_070 0.1066494741 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
6 Hb_000812_040 0.1157870026 - - zinc finger family protein [Populus trichocarpa]
7 Hb_003656_140 0.1192913566 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
8 Hb_150360_010 0.1222762631 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
9 Hb_023001_050 0.1234933362 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
10 Hb_004934_070 0.1236792428 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
11 Hb_002687_080 0.1261846067 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
12 Hb_008643_040 0.12625284 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
13 Hb_001025_110 0.1267485862 - - conserved hypothetical protein [Ricinus communis]
14 Hb_184570_010 0.127102652 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
15 Hb_001769_080 0.1273936143 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
16 Hb_005862_010 0.1317528397 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
17 Hb_033312_140 0.13372154 - - RNA and export factor-binding family protein [Populus trichocarpa]
18 Hb_187739_020 0.1339713232 - - PREDICTED: B2 protein [Jatropha curcas]
19 Hb_010691_060 0.1356941453 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
20 Hb_002067_120 0.1358517464 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_140291_010 Hb_140291_010 Hb_096490_020 Hb_096490_020 Hb_140291_010--Hb_096490_020 Hb_041392_010 Hb_041392_010 Hb_140291_010--Hb_041392_010 Hb_002007_180 Hb_002007_180 Hb_140291_010--Hb_002007_180 Hb_000416_070 Hb_000416_070 Hb_140291_010--Hb_000416_070 Hb_000812_040 Hb_000812_040 Hb_140291_010--Hb_000812_040 Hb_003656_140 Hb_003656_140 Hb_140291_010--Hb_003656_140 Hb_096490_020--Hb_002007_180 Hb_184570_010 Hb_184570_010 Hb_096490_020--Hb_184570_010 Hb_007229_070 Hb_007229_070 Hb_096490_020--Hb_007229_070 Hb_150360_010 Hb_150360_010 Hb_096490_020--Hb_150360_010 Hb_003746_060 Hb_003746_060 Hb_096490_020--Hb_003746_060 Hb_033312_140 Hb_033312_140 Hb_041392_010--Hb_033312_140 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_000606_080 Hb_000606_080 Hb_041392_010--Hb_000606_080 Hb_150204_010 Hb_150204_010 Hb_041392_010--Hb_150204_010 Hb_041392_010--Hb_150360_010 Hb_005260_020 Hb_005260_020 Hb_002007_180--Hb_005260_020 Hb_002737_070 Hb_002737_070 Hb_002007_180--Hb_002737_070 Hb_002007_180--Hb_000812_040 Hb_005714_130 Hb_005714_130 Hb_002007_180--Hb_005714_130 Hb_000080_060 Hb_000080_060 Hb_002007_180--Hb_000080_060 Hb_000416_070--Hb_184570_010 Hb_000069_160 Hb_000069_160 Hb_000416_070--Hb_000069_160 Hb_012760_130 Hb_012760_130 Hb_000416_070--Hb_012760_130 Hb_004934_070 Hb_004934_070 Hb_000416_070--Hb_004934_070 Hb_002687_080 Hb_002687_080 Hb_000416_070--Hb_002687_080 Hb_032927_010 Hb_032927_010 Hb_000812_040--Hb_032927_010 Hb_067776_010 Hb_067776_010 Hb_000812_040--Hb_067776_010 Hb_152554_010 Hb_152554_010 Hb_000812_040--Hb_152554_010 Hb_006502_080 Hb_006502_080 Hb_000812_040--Hb_006502_080 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_002023_020 Hb_002023_020 Hb_003656_140--Hb_002023_020 Hb_137403_010 Hb_137403_010 Hb_003656_140--Hb_137403_010 Hb_187739_020 Hb_187739_020 Hb_003656_140--Hb_187739_020 Hb_003656_140--Hb_150360_010 Hb_000866_030 Hb_000866_030 Hb_003656_140--Hb_000866_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00205 3.47727 4.16888 5.32273 3.90996 14.8241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97567 5.92132 2.80854 3.34714 0.682551

CAGE analysis