Hb_003861_040

Information

Type -
Description -
Location Contig3861: 48528-49043
Sequence    

Annotation

kegg
ID pvu:PHAVU_004G138700g
description hypothetical protein
nr
ID KDP44492.1
description hypothetical protein JCGZ_16325 [Jatropha curcas]
swissprot
ID Q9FLM8
description DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana GN=NRPB12 PE=1 SV=1
trembl
ID A0A067L7U6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16325 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases iv and v subunit 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38834: 46306-49055
cDNA
(Sanger)
(ID:Location)		 004_D03.ab1: 46370-49045 , 036_G14.ab1: 46377-49031 , 048_K15.ab1: 46370-49045

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_040 0.0 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
2 Hb_152554_010 0.1110085846 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
3 Hb_000162_260 0.1342932182 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
4 Hb_005367_010 0.1344636595 - - -
5 Hb_007441_270 0.1360232104 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
6 Hb_098852_010 0.1368170597 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
7 Hb_000812_040 0.1438919285 - - zinc finger family protein [Populus trichocarpa]
8 Hb_067776_010 0.1444454662 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
9 Hb_003994_270 0.1451638359 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
10 Hb_006909_030 0.1463891755 - - 40S ribosomal protein S17B [Hevea brasiliensis]
11 Hb_007188_020 0.1485029966 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
12 Hb_000500_060 0.1510044505 - - BnaC08g21190D [Brassica napus]
13 Hb_076875_020 0.1525601653 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_000108_140 0.1527205395 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
15 Hb_002217_310 0.1531638384 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
16 Hb_012653_040 0.1550465445 - - UV-induced protein uvi31, putative [Ricinus communis]
17 Hb_093666_020 0.1550682086 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_021238_050 0.1560152668 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001377_180 0.1567274196 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
20 Hb_000080_060 0.1569437143 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]

Gene co-expression network

sample Hb_003861_040 Hb_003861_040 Hb_152554_010 Hb_152554_010 Hb_003861_040--Hb_152554_010 Hb_000162_260 Hb_000162_260 Hb_003861_040--Hb_000162_260 Hb_005367_010 Hb_005367_010 Hb_003861_040--Hb_005367_010 Hb_007441_270 Hb_007441_270 Hb_003861_040--Hb_007441_270 Hb_098852_010 Hb_098852_010 Hb_003861_040--Hb_098852_010 Hb_000812_040 Hb_000812_040 Hb_003861_040--Hb_000812_040 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_006487_060 Hb_006487_060 Hb_152554_010--Hb_006487_060 Hb_152554_010--Hb_000812_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_000176_120 Hb_000176_120 Hb_152554_010--Hb_000176_120 Hb_000083_170 Hb_000083_170 Hb_000162_260--Hb_000083_170 Hb_001584_190 Hb_001584_190 Hb_000162_260--Hb_001584_190 Hb_037887_010 Hb_037887_010 Hb_000162_260--Hb_037887_010 Hb_012653_040 Hb_012653_040 Hb_000162_260--Hb_012653_040 Hb_066768_010 Hb_066768_010 Hb_000162_260--Hb_066768_010 Hb_000479_190 Hb_000479_190 Hb_000162_260--Hb_000479_190 Hb_005367_010--Hb_001377_180 Hb_005367_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_005367_010--Hb_136731_010 Hb_005367_010--Hb_007441_270 Hb_005367_010--Hb_000176_120 Hb_000003_730 Hb_000003_730 Hb_007441_270--Hb_000003_730 Hb_000684_230 Hb_000684_230 Hb_007441_270--Hb_000684_230 Hb_067776_010 Hb_067776_010 Hb_007441_270--Hb_067776_010 Hb_001269_320 Hb_001269_320 Hb_007441_270--Hb_001269_320 Hb_004502_020 Hb_004502_020 Hb_007441_270--Hb_004502_020 Hb_000500_060 Hb_000500_060 Hb_007441_270--Hb_000500_060 Hb_041205_010 Hb_041205_010 Hb_098852_010--Hb_041205_010 Hb_030982_020 Hb_030982_020 Hb_098852_010--Hb_030982_020 Hb_132180_010 Hb_132180_010 Hb_098852_010--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_098852_010--Hb_002078_260 Hb_000326_090 Hb_000326_090 Hb_098852_010--Hb_000326_090 Hb_032927_010 Hb_032927_010 Hb_000812_040--Hb_032927_010 Hb_000812_040--Hb_067776_010 Hb_006502_080 Hb_006502_080 Hb_000812_040--Hb_006502_080 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
773.71 193.723 349.789 1830.36 606.514 2313.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1129.68 1606.18 936.658 763.604 41.7013

CAGE analysis