Hb_032531_060

Information

Type -
Description -
Location Contig32531: 70686-71671
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa017035mg
description hypothetical protein
nr
ID XP_007212607.1
description hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WKL2
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017035mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34281: 37242-71735 , PASA_asmbl_34282: 37343-71630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032531_060 0.0 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
2 Hb_034579_010 0.0779168568 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
3 Hb_005731_140 0.1145780929 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
4 Hb_061581_010 0.1506824962 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
5 Hb_124141_010 0.1617147702 - - plant origin recognition complex subunit, putative [Ricinus communis]
6 Hb_000248_030 0.1691201383 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
7 Hb_005933_010 0.1753667364 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
8 Hb_073559_010 0.1794965793 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
9 Hb_000002_030 0.1795304238 - - -
10 Hb_106005_010 0.1840531397 - - EG5651 [Manihot esculenta]
11 Hb_168737_010 0.1867663004 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002960_050 0.1895447693 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
13 Hb_000204_020 0.192501782 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
14 Hb_008277_030 0.1947035798 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
15 Hb_000316_090 0.1972647604 - - -
16 Hb_007124_010 0.2001089755 - - unnamed protein product [Coffea canephora]
17 Hb_000248_010 0.2057705174 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
18 Hb_121236_010 0.2065082929 - - geranyl-diphosphate synthase [Hevea brasiliensis]
19 Hb_032531_050 0.2111904408 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
20 Hb_088065_010 0.2116139406 - - hypothetical protein glysoja_007934 [Glycine soja]

Gene co-expression network

sample Hb_032531_060 Hb_032531_060 Hb_034579_010 Hb_034579_010 Hb_032531_060--Hb_034579_010 Hb_005731_140 Hb_005731_140 Hb_032531_060--Hb_005731_140 Hb_061581_010 Hb_061581_010 Hb_032531_060--Hb_061581_010 Hb_124141_010 Hb_124141_010 Hb_032531_060--Hb_124141_010 Hb_000248_030 Hb_000248_030 Hb_032531_060--Hb_000248_030 Hb_005933_010 Hb_005933_010 Hb_032531_060--Hb_005933_010 Hb_034579_010--Hb_005731_140 Hb_034579_010--Hb_124141_010 Hb_000002_030 Hb_000002_030 Hb_034579_010--Hb_000002_030 Hb_034579_010--Hb_005933_010 Hb_168737_010 Hb_168737_010 Hb_034579_010--Hb_168737_010 Hb_002482_060 Hb_002482_060 Hb_005731_140--Hb_002482_060 Hb_106005_010 Hb_106005_010 Hb_005731_140--Hb_106005_010 Hb_005731_140--Hb_124141_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_121236_010 Hb_121236_010 Hb_061581_010--Hb_121236_010 Hb_135403_010 Hb_135403_010 Hb_061581_010--Hb_135403_010 Hb_115919_010 Hb_115919_010 Hb_061581_010--Hb_115919_010 Hb_001095_060 Hb_001095_060 Hb_061581_010--Hb_001095_060 Hb_061581_010--Hb_034579_010 Hb_003029_100 Hb_003029_100 Hb_124141_010--Hb_003029_100 Hb_166480_010 Hb_166480_010 Hb_124141_010--Hb_166480_010 Hb_124141_010--Hb_002482_060 Hb_000248_010 Hb_000248_010 Hb_000248_030--Hb_000248_010 Hb_000248_030--Hb_005933_010 Hb_001235_060 Hb_001235_060 Hb_000248_030--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_000248_030--Hb_122567_020 Hb_073559_010 Hb_073559_010 Hb_000248_030--Hb_073559_010 Hb_002960_050 Hb_002960_050 Hb_000248_030--Hb_002960_050 Hb_005933_010--Hb_122567_020 Hb_005933_010--Hb_001235_060 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.7581 4.47595 4.80259 107.5 54.6872 1154.4
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
161.975 172.143 120.522 18.922 24.8446

CAGE analysis