Hb_115919_010

Information

Type -
Description -
Location Contig115919: 1947-6491
Sequence    

Annotation

kegg
ID pop:POPTR_0010s148601
description geranyl diphosphate synthase family protein
nr
ID AFK35985.1
description unknown [Lotus japonicus]
swissprot
ID Q6CBH3
description Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1 PE=3 SV=1
trembl
ID I3S6U3
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0004161
description solanesyl diphosphate synthase chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04793: 1973-6676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115919_010 0.0 - - unknown [Lotus japonicus]
2 Hb_121236_010 0.0667305932 - - geranyl-diphosphate synthase [Hevea brasiliensis]
3 Hb_027445_060 0.1157118981 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
4 Hb_001095_060 0.1205172126 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
5 Hb_061581_010 0.1421324301 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
6 Hb_005305_060 0.1549066243 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
7 Hb_000122_030 0.1602966522 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
8 Hb_004117_180 0.1611902076 - - -
9 Hb_008725_200 0.1734598495 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
10 Hb_001488_110 0.1767737984 - - -
11 Hb_004502_050 0.1773861354 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
12 Hb_068946_010 0.1801694437 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
13 Hb_144898_010 0.1818324348 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_021888_110 0.1823843049 - - -
15 Hb_001310_070 0.1853678185 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
16 Hb_135403_010 0.1860278451 - - HEV1.1 [Hevea brasiliensis]
17 Hb_000107_140 0.1862404211 - - -
18 Hb_002368_040 0.1862456128 - - hypothetical protein PRUPE_ppa019172mg [Prunus persica]
19 Hb_011016_090 0.1872932157 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
20 Hb_004968_060 0.1879203754 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_115919_010 Hb_115919_010 Hb_121236_010 Hb_121236_010 Hb_115919_010--Hb_121236_010 Hb_027445_060 Hb_027445_060 Hb_115919_010--Hb_027445_060 Hb_001095_060 Hb_001095_060 Hb_115919_010--Hb_001095_060 Hb_061581_010 Hb_061581_010 Hb_115919_010--Hb_061581_010 Hb_005305_060 Hb_005305_060 Hb_115919_010--Hb_005305_060 Hb_000122_030 Hb_000122_030 Hb_115919_010--Hb_000122_030 Hb_121236_010--Hb_027445_060 Hb_121236_010--Hb_061581_010 Hb_121236_010--Hb_001095_060 Hb_121236_010--Hb_005305_060 Hb_135403_010 Hb_135403_010 Hb_121236_010--Hb_135403_010 Hb_068946_010 Hb_068946_010 Hb_027445_060--Hb_068946_010 Hb_027445_060--Hb_001095_060 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_027445_060--Hb_005305_060 Hb_001095_060--Hb_068946_010 Hb_001095_060--Hb_061581_010 Hb_001488_110 Hb_001488_110 Hb_001095_060--Hb_001488_110 Hb_061581_010--Hb_135403_010 Hb_032531_060 Hb_032531_060 Hb_061581_010--Hb_032531_060 Hb_034579_010 Hb_034579_010 Hb_061581_010--Hb_034579_010 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_001310_070 Hb_001310_070 Hb_000122_030--Hb_001310_070 Hb_001057_050 Hb_001057_050 Hb_000122_030--Hb_001057_050 Hb_000003_350 Hb_000003_350 Hb_000122_030--Hb_000003_350 Hb_004117_180 Hb_004117_180 Hb_000122_030--Hb_004117_180 Hb_000122_030--Hb_005305_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
442.89 13.3278 7.43261 165.238 275.983 1883.05
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
554.485 632.348 208.786 40.646 3.16966

CAGE analysis