Hb_000003_350

Information

Type -
Description -
Location Contig3: 210052-210518
Sequence    

Annotation

kegg
ID pop:POPTR_1155s00200g
description hypothetical protein
nr
ID XP_006387366.1
description hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DTP2
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_1155s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_350 0.0 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
2 Hb_000243_010 0.1283216162 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
3 Hb_002259_150 0.1338397427 - - BnaC04g40780D [Brassica napus]
4 Hb_001629_100 0.1346187226 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
5 Hb_000175_400 0.1458498358 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000193_350 0.1518307137 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
7 Hb_001057_050 0.1520943452 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
8 Hb_000453_260 0.153096662 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
9 Hb_102156_010 0.1541563979 - - conserved hypothetical protein [Ricinus communis]
10 Hb_098315_120 0.1550437709 - - -
11 Hb_001754_010 0.1565174545 - - translationally controlled tumor protein [Hevea brasiliensis]
12 Hb_000329_770 0.1570344171 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000120_590 0.1629153541 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
14 Hb_003043_070 0.1632692471 - - -
15 Hb_000122_030 0.1646434103 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
16 Hb_003687_020 0.1654216766 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
17 Hb_002272_260 0.1705327983 - - -
18 Hb_004453_150 0.1708383342 - - BnaC02g13240D [Brassica napus]
19 Hb_025193_050 0.1742615321 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
20 Hb_031527_050 0.1749401317 - - PREDICTED: universal stress protein A-like protein [Populus euphratica]

Gene co-expression network

sample Hb_000003_350 Hb_000003_350 Hb_000243_010 Hb_000243_010 Hb_000003_350--Hb_000243_010 Hb_002259_150 Hb_002259_150 Hb_000003_350--Hb_002259_150 Hb_001629_100 Hb_001629_100 Hb_000003_350--Hb_001629_100 Hb_000175_400 Hb_000175_400 Hb_000003_350--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_000003_350--Hb_000193_350 Hb_001057_050 Hb_001057_050 Hb_000003_350--Hb_001057_050 Hb_000243_010--Hb_000175_400 Hb_025193_050 Hb_025193_050 Hb_000243_010--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_000243_010--Hb_000152_430 Hb_000608_420 Hb_000608_420 Hb_000243_010--Hb_000608_420 Hb_000318_380 Hb_000318_380 Hb_000243_010--Hb_000318_380 Hb_007317_060 Hb_007317_060 Hb_002259_150--Hb_007317_060 Hb_002272_260 Hb_002272_260 Hb_002259_150--Hb_002272_260 Hb_102156_010 Hb_102156_010 Hb_002259_150--Hb_102156_010 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_004453_150 Hb_004453_150 Hb_002259_150--Hb_004453_150 Hb_002259_150--Hb_000193_350 Hb_001754_010 Hb_001754_010 Hb_001629_100--Hb_001754_010 Hb_001008_010 Hb_001008_010 Hb_001629_100--Hb_001008_010 Hb_130291_010 Hb_130291_010 Hb_001629_100--Hb_130291_010 Hb_000120_590 Hb_000120_590 Hb_001629_100--Hb_000120_590 Hb_098315_120 Hb_098315_120 Hb_001629_100--Hb_098315_120 Hb_001629_100--Hb_100777_010 Hb_000175_400--Hb_000193_350 Hb_002259_030 Hb_002259_030 Hb_000175_400--Hb_002259_030 Hb_000175_400--Hb_004453_150 Hb_000175_400--Hb_025193_050 Hb_011016_090 Hb_011016_090 Hb_000175_400--Hb_011016_090 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_000193_350--Hb_011016_090 Hb_004807_060 Hb_004807_060 Hb_001057_050--Hb_004807_060 Hb_001057_050--Hb_000193_350 Hb_001057_050--Hb_102156_010 Hb_001057_050--Hb_000175_400 Hb_001057_050--Hb_017711_010 Hb_001057_050--Hb_002259_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.27807 2.24941 0.555618 5.14619 13.5556 39.147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3611 27.0765 8.71245 11.3425 1.18695

CAGE analysis