Hb_068946_010

Information

Type -
Description -
Location Contig68946: 4210-5592
Sequence    

Annotation

kegg
ID cic:CICLE_v100122621m
description hypothetical protein
nr
ID XP_006428543.1
description hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4S331
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100122621mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068946_010 0.0 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
2 Hb_027445_060 0.1307265212 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
3 Hb_001095_060 0.1451316679 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
4 Hb_001488_110 0.1494888857 - - -
5 Hb_004072_010 0.1609611296 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
6 Hb_004968_060 0.1614739379 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005935_010 0.1717487095 - - -
8 Hb_121236_010 0.1725755672 - - geranyl-diphosphate synthase [Hevea brasiliensis]
9 Hb_003327_060 0.1727928832 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
10 Hb_000914_060 0.1728312804 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
11 Hb_077562_040 0.1741864562 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
12 Hb_120221_010 0.1761350593 - - -
13 Hb_033448_010 0.1763921257 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
14 Hb_000563_530 0.1778537631 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
15 Hb_115919_010 0.1801694437 - - unknown [Lotus japonicus]
16 Hb_011016_090 0.1803615784 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
17 Hb_003813_100 0.1812459239 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
18 Hb_000155_070 0.1862284902 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
19 Hb_134789_010 0.1875145497 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
20 Hb_002626_020 0.1888218317 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_068946_010 Hb_068946_010 Hb_027445_060 Hb_027445_060 Hb_068946_010--Hb_027445_060 Hb_001095_060 Hb_001095_060 Hb_068946_010--Hb_001095_060 Hb_001488_110 Hb_001488_110 Hb_068946_010--Hb_001488_110 Hb_004072_010 Hb_004072_010 Hb_068946_010--Hb_004072_010 Hb_004968_060 Hb_004968_060 Hb_068946_010--Hb_004968_060 Hb_005935_010 Hb_005935_010 Hb_068946_010--Hb_005935_010 Hb_121236_010 Hb_121236_010 Hb_027445_060--Hb_121236_010 Hb_115919_010 Hb_115919_010 Hb_027445_060--Hb_115919_010 Hb_027445_060--Hb_001095_060 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_005305_060 Hb_005305_060 Hb_027445_060--Hb_005305_060 Hb_001095_060--Hb_121236_010 Hb_001095_060--Hb_115919_010 Hb_061581_010 Hb_061581_010 Hb_001095_060--Hb_061581_010 Hb_001095_060--Hb_001488_110 Hb_077562_040 Hb_077562_040 Hb_001488_110--Hb_077562_040 Hb_001488_110--Hb_027445_060 Hb_000184_120 Hb_000184_120 Hb_001488_110--Hb_000184_120 Hb_004025_030 Hb_004025_030 Hb_001488_110--Hb_004025_030 Hb_000563_530 Hb_000563_530 Hb_001488_110--Hb_000563_530 Hb_004242_100 Hb_004242_100 Hb_004072_010--Hb_004242_100 Hb_000700_090 Hb_000700_090 Hb_004072_010--Hb_000700_090 Hb_006816_360 Hb_006816_360 Hb_004072_010--Hb_006816_360 Hb_005245_090 Hb_005245_090 Hb_004072_010--Hb_005245_090 Hb_098709_010 Hb_098709_010 Hb_004072_010--Hb_098709_010 Hb_005941_010 Hb_005941_010 Hb_004072_010--Hb_005941_010 Hb_003327_060 Hb_003327_060 Hb_004968_060--Hb_003327_060 Hb_138413_010 Hb_138413_010 Hb_004968_060--Hb_138413_010 Hb_004223_200 Hb_004223_200 Hb_004968_060--Hb_004223_200 Hb_000914_060 Hb_000914_060 Hb_004968_060--Hb_000914_060 Hb_004968_060--Hb_000563_530 Hb_002200_120 Hb_002200_120 Hb_004968_060--Hb_002200_120 Hb_002626_020 Hb_002626_020 Hb_005935_010--Hb_002626_020 Hb_002687_050 Hb_002687_050 Hb_005935_010--Hb_002687_050 Hb_002400_090 Hb_002400_090 Hb_005935_010--Hb_002400_090 Hb_123202_010 Hb_123202_010 Hb_005935_010--Hb_123202_010 Hb_008725_200 Hb_008725_200 Hb_005935_010--Hb_008725_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.21665 0.661097 0.0288765 0.0323328 3.5513 19.5143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.14243 7.6387 3.71982 1.83445 0.257643

CAGE analysis