Hb_002626_020

Information

Type -
Description -
Location Contig2626: 11917-12526
Sequence    

Annotation

kegg
ID rcu:RCOM_0711420
description Methylthioribose-1-phosphate isomerase, putative (EC:5.3.1.23)
nr
ID XP_012077066.1
description PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
swissprot
ID B9RR88
description Methylthioribose-1-phosphate isomerase OS=Ricinus communis GN=RCOM_0711420 PE=2 SV=1
trembl
ID A0A067KNQ9
description Methylthioribose-1-phosphate isomerase OS=Jatropha curcas GN=JCGZ_07501 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002626_020 0.0 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
2 Hb_005935_010 0.1292853794 - - -
3 Hb_000453_260 0.1634242421 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
4 Hb_004072_010 0.1870222509 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
5 Hb_068946_010 0.1888218317 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
6 Hb_000491_090 0.1955752485 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
7 Hb_134789_010 0.1958547463 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
8 Hb_004242_100 0.1986230942 - - RNA binding protein, putative [Ricinus communis]
9 Hb_008725_200 0.1990362512 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
10 Hb_123202_010 0.2008568037 - - thioredoxin h [Hevea brasiliensis]
11 Hb_002687_050 0.2075922635 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
12 Hb_015057_010 0.2080948304 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
13 Hb_002197_030 0.2114499787 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
14 Hb_003813_100 0.2126656781 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
15 Hb_004735_010 0.2130228729 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
16 Hb_001095_060 0.2131315081 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
17 Hb_000329_770 0.2168068424 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004116_040 0.217927428 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
19 Hb_002301_020 0.2191246166 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
20 Hb_001248_020 0.219362267 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]

Gene co-expression network

sample Hb_002626_020 Hb_002626_020 Hb_005935_010 Hb_005935_010 Hb_002626_020--Hb_005935_010 Hb_000453_260 Hb_000453_260 Hb_002626_020--Hb_000453_260 Hb_004072_010 Hb_004072_010 Hb_002626_020--Hb_004072_010 Hb_068946_010 Hb_068946_010 Hb_002626_020--Hb_068946_010 Hb_000491_090 Hb_000491_090 Hb_002626_020--Hb_000491_090 Hb_134789_010 Hb_134789_010 Hb_002626_020--Hb_134789_010 Hb_005935_010--Hb_068946_010 Hb_002687_050 Hb_002687_050 Hb_005935_010--Hb_002687_050 Hb_002400_090 Hb_002400_090 Hb_005935_010--Hb_002400_090 Hb_123202_010 Hb_123202_010 Hb_005935_010--Hb_123202_010 Hb_008725_200 Hb_008725_200 Hb_005935_010--Hb_008725_200 Hb_002197_030 Hb_002197_030 Hb_000453_260--Hb_002197_030 Hb_000995_050 Hb_000995_050 Hb_000453_260--Hb_000995_050 Hb_015057_010 Hb_015057_010 Hb_000453_260--Hb_015057_010 Hb_000453_260--Hb_123202_010 Hb_004242_100 Hb_004242_100 Hb_000453_260--Hb_004242_100 Hb_000329_770 Hb_000329_770 Hb_000453_260--Hb_000329_770 Hb_004072_010--Hb_004242_100 Hb_000700_090 Hb_000700_090 Hb_004072_010--Hb_000700_090 Hb_006816_360 Hb_006816_360 Hb_004072_010--Hb_006816_360 Hb_005245_090 Hb_005245_090 Hb_004072_010--Hb_005245_090 Hb_098709_010 Hb_098709_010 Hb_004072_010--Hb_098709_010 Hb_005941_010 Hb_005941_010 Hb_004072_010--Hb_005941_010 Hb_027445_060 Hb_027445_060 Hb_068946_010--Hb_027445_060 Hb_001095_060 Hb_001095_060 Hb_068946_010--Hb_001095_060 Hb_001488_110 Hb_001488_110 Hb_068946_010--Hb_001488_110 Hb_068946_010--Hb_004072_010 Hb_004968_060 Hb_004968_060 Hb_068946_010--Hb_004968_060 Hb_000491_090--Hb_015057_010 Hb_004448_020 Hb_004448_020 Hb_000491_090--Hb_004448_020 Hb_000380_010 Hb_000380_010 Hb_000491_090--Hb_000380_010 Hb_001221_510 Hb_001221_510 Hb_000491_090--Hb_001221_510 Hb_001173_040 Hb_001173_040 Hb_000491_090--Hb_001173_040 Hb_100777_010 Hb_100777_010 Hb_000491_090--Hb_100777_010 Hb_006787_040 Hb_006787_040 Hb_134789_010--Hb_006787_040 Hb_115919_020 Hb_115919_020 Hb_134789_010--Hb_115919_020 Hb_000442_030 Hb_000442_030 Hb_134789_010--Hb_000442_030 Hb_007317_220 Hb_007317_220 Hb_134789_010--Hb_007317_220 Hb_000849_040 Hb_000849_040 Hb_134789_010--Hb_000849_040 Hb_008408_030 Hb_008408_030 Hb_134789_010--Hb_008408_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48575 0 0.0746224 0.197352 1.1954 8.40249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.14979 2.63843 3.03681 2.06146 0

CAGE analysis