Hb_000995_050

Information

Type -
Description -
Location Contig995: 94384-94821
Sequence    

Annotation

kegg
ID rcu:RCOM_0502070
description 40S ribosomal protein S17, putative
nr
ID ADR71229.1
description 40S ribosomal protein S17C [Hevea brasiliensis]
swissprot
ID Q9LZ17
description 40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3
trembl
ID I3NMJ2
description 40S ribosomal protein S17C OS=Hevea brasiliensis GN=RPS17C PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64822: 94183-94939
cDNA
(Sanger)
(ID:Location)		 015_H06.ab1: 94278-94939 , 016_I04.ab1: 94224-94939 , 034_L02.ab1: 94202-94939

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000995_050 0.0 - - 40S ribosomal protein S17C [Hevea brasiliensis]
2 Hb_120221_010 0.106923698 - - -
3 Hb_000453_260 0.1234487798 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
4 Hb_000156_130 0.1261863517 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
5 Hb_002259_030 0.1277732271 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000510_090 0.1308232365 - - 40S ribosomal protein S15 [Morus notabilis]
7 Hb_005916_030 0.1337974549 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
8 Hb_000442_100 0.1391378391 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
9 Hb_002263_010 0.1393425637 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
10 Hb_000381_080 0.1396130175 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
11 Hb_003746_060 0.1404790996 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
12 Hb_034585_030 0.1405792372 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
13 Hb_001818_080 0.1427208219 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
14 Hb_003777_270 0.1457018452 - - 60S ribosomal protein L3B [Hevea brasiliensis]
15 Hb_030312_040 0.1480001107 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
16 Hb_084934_010 0.1481060778 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
17 Hb_000243_010 0.1492083645 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
18 Hb_000175_400 0.150035544 - - conserved hypothetical protein [Ricinus communis]
19 Hb_143947_010 0.1520238738 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
20 Hb_003911_040 0.152192676 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000995_050 Hb_000995_050 Hb_120221_010 Hb_120221_010 Hb_000995_050--Hb_120221_010 Hb_000453_260 Hb_000453_260 Hb_000995_050--Hb_000453_260 Hb_000156_130 Hb_000156_130 Hb_000995_050--Hb_000156_130 Hb_002259_030 Hb_002259_030 Hb_000995_050--Hb_002259_030 Hb_000510_090 Hb_000510_090 Hb_000995_050--Hb_000510_090 Hb_005916_030 Hb_005916_030 Hb_000995_050--Hb_005916_030 Hb_011016_090 Hb_011016_090 Hb_120221_010--Hb_011016_090 Hb_002821_010 Hb_002821_010 Hb_120221_010--Hb_002821_010 Hb_120221_010--Hb_002259_030 Hb_000381_080 Hb_000381_080 Hb_120221_010--Hb_000381_080 Hb_001976_050 Hb_001976_050 Hb_120221_010--Hb_001976_050 Hb_002197_030 Hb_002197_030 Hb_000453_260--Hb_002197_030 Hb_015057_010 Hb_015057_010 Hb_000453_260--Hb_015057_010 Hb_123202_010 Hb_123202_010 Hb_000453_260--Hb_123202_010 Hb_004242_100 Hb_004242_100 Hb_000453_260--Hb_004242_100 Hb_000329_770 Hb_000329_770 Hb_000453_260--Hb_000329_770 Hb_002307_030 Hb_002307_030 Hb_000156_130--Hb_002307_030 Hb_002374_160 Hb_002374_160 Hb_000156_130--Hb_002374_160 Hb_143813_010 Hb_143813_010 Hb_000156_130--Hb_143813_010 Hb_002374_490 Hb_002374_490 Hb_000156_130--Hb_002374_490 Hb_001477_130 Hb_001477_130 Hb_000156_130--Hb_001477_130 Hb_001454_140 Hb_001454_140 Hb_000156_130--Hb_001454_140 Hb_000032_540 Hb_000032_540 Hb_002259_030--Hb_000032_540 Hb_000175_400 Hb_000175_400 Hb_002259_030--Hb_000175_400 Hb_002259_030--Hb_011016_090 Hb_004453_150 Hb_004453_150 Hb_002259_030--Hb_004453_150 Hb_002259_030--Hb_000156_130 Hb_002259_030--Hb_001454_140 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_155375_010 Hb_155375_010 Hb_000510_090--Hb_155375_010 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_000575_080 Hb_000575_080 Hb_005916_030--Hb_000575_080 Hb_005260_020 Hb_005260_020 Hb_005916_030--Hb_005260_020 Hb_022461_010 Hb_022461_010 Hb_005916_030--Hb_022461_010 Hb_001054_130 Hb_001054_130 Hb_005916_030--Hb_001054_130 Hb_006502_080 Hb_006502_080 Hb_005916_030--Hb_006502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
808.309 592.555 86.2523 172.01 788.447 2481.87
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1240.49 1300.68 613.833 680.201 27.2632

CAGE analysis