Hb_000381_080

Information

Type transcription factor
Description TF Family: SNF2
Location Contig381: 143351-148611
Sequence    

Annotation

kegg
ID rcu:RCOM_1224050
description DNA repair helicase rad5,16, putative (EC:2.7.11.1)
nr
ID XP_012089873.1
description PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
swissprot
ID P79051
description ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV=2
trembl
ID A0A067JT95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01831 PE=4 SV=1
Gene Ontology
ID GO:0005524
description helicase protein with ring u-box domain isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000381_080 0.0 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
2 Hb_000442_100 0.1316707026 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
3 Hb_120221_010 0.137856086 - - -
4 Hb_000995_050 0.1396130175 - - 40S ribosomal protein S17C [Hevea brasiliensis]
5 Hb_002821_010 0.1415217915 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
6 Hb_084934_010 0.1435402387 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
7 Hb_000156_130 0.1472741891 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
8 Hb_002259_030 0.1484979857 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005565_030 0.1558085494 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
10 Hb_002263_010 0.1585520332 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
11 Hb_001818_080 0.158707182 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
12 Hb_008959_030 0.1593661095 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_003978_010 0.1618380807 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_030312_040 0.1644658982 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
15 Hb_000795_050 0.1665397243 - - hypothetical protein CISIN_1g0154952mg, partial [Citrus sinensis]
16 Hb_000085_270 0.1704853213 - - PREDICTED: pirin-like protein [Malus domestica]
17 Hb_004070_030 0.172469982 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_012052_060 0.1726371903 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
19 Hb_004374_200 0.1727703344 - - putative GMP synthase [Oxybasis rubra]
20 Hb_143947_010 0.1739412514 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000381_080 Hb_000381_080 Hb_000442_100 Hb_000442_100 Hb_000381_080--Hb_000442_100 Hb_120221_010 Hb_120221_010 Hb_000381_080--Hb_120221_010 Hb_000995_050 Hb_000995_050 Hb_000381_080--Hb_000995_050 Hb_002821_010 Hb_002821_010 Hb_000381_080--Hb_002821_010 Hb_084934_010 Hb_084934_010 Hb_000381_080--Hb_084934_010 Hb_000156_130 Hb_000156_130 Hb_000381_080--Hb_000156_130 Hb_004724_100 Hb_004724_100 Hb_000442_100--Hb_004724_100 Hb_003086_110 Hb_003086_110 Hb_000442_100--Hb_003086_110 Hb_001818_080 Hb_001818_080 Hb_000442_100--Hb_001818_080 Hb_034585_030 Hb_034585_030 Hb_000442_100--Hb_034585_030 Hb_015026_120 Hb_015026_120 Hb_000442_100--Hb_015026_120 Hb_000617_320 Hb_000617_320 Hb_000442_100--Hb_000617_320 Hb_120221_010--Hb_000995_050 Hb_011016_090 Hb_011016_090 Hb_120221_010--Hb_011016_090 Hb_120221_010--Hb_002821_010 Hb_002259_030 Hb_002259_030 Hb_120221_010--Hb_002259_030 Hb_001976_050 Hb_001976_050 Hb_120221_010--Hb_001976_050 Hb_000453_260 Hb_000453_260 Hb_000995_050--Hb_000453_260 Hb_000995_050--Hb_000156_130 Hb_000995_050--Hb_002259_030 Hb_000510_090 Hb_000510_090 Hb_000995_050--Hb_000510_090 Hb_005916_030 Hb_005916_030 Hb_000995_050--Hb_005916_030 Hb_002821_010--Hb_084934_010 Hb_027472_090 Hb_027472_090 Hb_002821_010--Hb_027472_090 Hb_170305_020 Hb_170305_020 Hb_002821_010--Hb_170305_020 Hb_000366_100 Hb_000366_100 Hb_002821_010--Hb_000366_100 Hb_011472_040 Hb_011472_040 Hb_084934_010--Hb_011472_040 Hb_006189_010 Hb_006189_010 Hb_084934_010--Hb_006189_010 Hb_084934_010--Hb_003086_110 Hb_157854_010 Hb_157854_010 Hb_084934_010--Hb_157854_010 Hb_118977_020 Hb_118977_020 Hb_084934_010--Hb_118977_020 Hb_030312_040 Hb_030312_040 Hb_084934_010--Hb_030312_040 Hb_002307_030 Hb_002307_030 Hb_000156_130--Hb_002307_030 Hb_002374_160 Hb_002374_160 Hb_000156_130--Hb_002374_160 Hb_143813_010 Hb_143813_010 Hb_000156_130--Hb_143813_010 Hb_002374_490 Hb_002374_490 Hb_000156_130--Hb_002374_490 Hb_001477_130 Hb_001477_130 Hb_000156_130--Hb_001477_130 Hb_001454_140 Hb_001454_140 Hb_000156_130--Hb_001454_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.713781 0.526595 0.0231201 0.0594385 0.263188 1.20895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.888544 0.860468 0.305876 0.213975 0.0378755

CAGE analysis