Hb_006189_010

Information

Type -
Description -
Location Contig6189: 4357-5800
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006189_010 0.0 - - -
2 Hb_084934_010 0.094606924 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
3 Hb_180333_010 0.0989281145 - - -
4 Hb_011472_040 0.1033354985 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
5 Hb_004607_150 0.1052848696 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
6 Hb_001186_060 0.1076312427 - - -
7 Hb_157854_010 0.1096099202 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
8 Hb_012052_060 0.1143436912 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
9 Hb_004012_010 0.122017881 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
10 Hb_002762_060 0.124144517 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
11 Hb_004920_040 0.1263941728 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
12 Hb_003185_020 0.1267209195 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
13 Hb_000809_040 0.133695678 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
14 Hb_003086_020 0.1342178831 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
15 Hb_009026_050 0.1343758962 - - vacuolar ATPase F subunit [Hevea brasiliensis]
16 Hb_000866_300 0.1348055432 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
17 Hb_001767_100 0.1352854845 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
18 Hb_006775_080 0.1371988146 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
19 Hb_004607_140 0.138046536 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
20 Hb_000163_200 0.1383788013 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]

Gene co-expression network

sample Hb_006189_010 Hb_006189_010 Hb_084934_010 Hb_084934_010 Hb_006189_010--Hb_084934_010 Hb_180333_010 Hb_180333_010 Hb_006189_010--Hb_180333_010 Hb_011472_040 Hb_011472_040 Hb_006189_010--Hb_011472_040 Hb_004607_150 Hb_004607_150 Hb_006189_010--Hb_004607_150 Hb_001186_060 Hb_001186_060 Hb_006189_010--Hb_001186_060 Hb_157854_010 Hb_157854_010 Hb_006189_010--Hb_157854_010 Hb_084934_010--Hb_011472_040 Hb_003086_110 Hb_003086_110 Hb_084934_010--Hb_003086_110 Hb_084934_010--Hb_157854_010 Hb_118977_020 Hb_118977_020 Hb_084934_010--Hb_118977_020 Hb_030312_040 Hb_030312_040 Hb_084934_010--Hb_030312_040 Hb_180333_010--Hb_004607_150 Hb_003185_020 Hb_003185_020 Hb_180333_010--Hb_003185_020 Hb_003106_070 Hb_003106_070 Hb_180333_010--Hb_003106_070 Hb_004012_010 Hb_004012_010 Hb_180333_010--Hb_004012_010 Hb_000085_270 Hb_000085_270 Hb_180333_010--Hb_000085_270 Hb_001975_070 Hb_001975_070 Hb_011472_040--Hb_001975_070 Hb_011472_040--Hb_030312_040 Hb_001655_070 Hb_001655_070 Hb_011472_040--Hb_001655_070 Hb_012052_060 Hb_012052_060 Hb_011472_040--Hb_012052_060 Hb_002798_060 Hb_002798_060 Hb_004607_150--Hb_002798_060 Hb_000116_470 Hb_000116_470 Hb_004607_150--Hb_000116_470 Hb_004607_150--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_004607_150--Hb_004920_040 Hb_001930_070 Hb_001930_070 Hb_001186_060--Hb_001930_070 Hb_000371_110 Hb_000371_110 Hb_001186_060--Hb_000371_110 Hb_006499_010 Hb_006499_010 Hb_001186_060--Hb_006499_010 Hb_000163_290 Hb_000163_290 Hb_001186_060--Hb_000163_290 Hb_000033_050 Hb_000033_050 Hb_001186_060--Hb_000033_050 Hb_002762_060 Hb_002762_060 Hb_157854_010--Hb_002762_060 Hb_157854_010--Hb_118977_020 Hb_003086_020 Hb_003086_020 Hb_157854_010--Hb_003086_020 Hb_157854_010--Hb_003185_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_004607_140 Hb_004607_140 Hb_157854_010--Hb_004607_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0095 9.94889 0.777176 0.680051 15.29 15.4933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5928 18.6742 11.608 7.43026 0.536712

CAGE analysis