Hb_004607_150

Information

Type -
Description -
Location Contig4607: 99532-100854
Sequence    

Annotation

kegg
ID rcu:RCOM_1577300
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_012089961.1
description PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
swissprot
ID Q9LT38
description Serine/threonine-protein kinase UCNL OS=Arabidopsis thaliana GN=UCNL PE=2 SV=1
trembl
ID A0A067JRA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25895 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase oxi1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43725: 99581-99935 , PASA_asmbl_43726: 100090-101049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_150 0.0 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
2 Hb_180333_010 0.096158831 - - -
3 Hb_006189_010 0.1052848696 - - -
4 Hb_002798_060 0.1147715534 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
5 Hb_000116_470 0.1166339457 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
6 Hb_004012_010 0.1181342101 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
7 Hb_004920_040 0.1203317449 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
8 Hb_000926_290 0.1214099262 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008959_030 0.121989669 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
10 Hb_006775_080 0.1291659775 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
11 Hb_004055_010 0.1314680334 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_000483_350 0.1341174762 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
13 Hb_012052_060 0.1352759799 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
14 Hb_003185_020 0.1392392552 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
15 Hb_003687_140 0.1421492806 - - BnaCnng65050D [Brassica napus]
16 Hb_000085_270 0.1423333154 - - PREDICTED: pirin-like protein [Malus domestica]
17 Hb_169325_010 0.1438606599 - - PREDICTED: uncharacterized protein LOC103699787, partial [Phoenix dactylifera]
18 Hb_000042_030 0.1444793873 transcription factor TF Family: NAC NAC domain protein, IPR003441 [Theobroma cacao]
19 Hb_024835_030 0.1452758604 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
20 Hb_000261_490 0.1461604676 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_004607_150 Hb_004607_150 Hb_180333_010 Hb_180333_010 Hb_004607_150--Hb_180333_010 Hb_006189_010 Hb_006189_010 Hb_004607_150--Hb_006189_010 Hb_002798_060 Hb_002798_060 Hb_004607_150--Hb_002798_060 Hb_000116_470 Hb_000116_470 Hb_004607_150--Hb_000116_470 Hb_004012_010 Hb_004012_010 Hb_004607_150--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_004607_150--Hb_004920_040 Hb_180333_010--Hb_006189_010 Hb_003185_020 Hb_003185_020 Hb_180333_010--Hb_003185_020 Hb_003106_070 Hb_003106_070 Hb_180333_010--Hb_003106_070 Hb_180333_010--Hb_004012_010 Hb_000085_270 Hb_000085_270 Hb_180333_010--Hb_000085_270 Hb_084934_010 Hb_084934_010 Hb_006189_010--Hb_084934_010 Hb_011472_040 Hb_011472_040 Hb_006189_010--Hb_011472_040 Hb_001186_060 Hb_001186_060 Hb_006189_010--Hb_001186_060 Hb_157854_010 Hb_157854_010 Hb_006189_010--Hb_157854_010 Hb_009486_190 Hb_009486_190 Hb_002798_060--Hb_009486_190 Hb_008959_030 Hb_008959_030 Hb_002798_060--Hb_008959_030 Hb_002798_060--Hb_004012_010 Hb_023536_010 Hb_023536_010 Hb_002798_060--Hb_023536_010 Hb_000599_140 Hb_000599_140 Hb_002798_060--Hb_000599_140 Hb_021068_050 Hb_021068_050 Hb_000116_470--Hb_021068_050 Hb_003151_050 Hb_003151_050 Hb_000116_470--Hb_003151_050 Hb_000091_090 Hb_000091_090 Hb_000116_470--Hb_000091_090 Hb_000124_020 Hb_000124_020 Hb_000116_470--Hb_000124_020 Hb_000376_050 Hb_000376_050 Hb_000116_470--Hb_000376_050 Hb_002411_200 Hb_002411_200 Hb_000116_470--Hb_002411_200 Hb_024835_030 Hb_024835_030 Hb_004012_010--Hb_024835_030 Hb_026198_050 Hb_026198_050 Hb_004012_010--Hb_026198_050 Hb_006775_080 Hb_006775_080 Hb_004012_010--Hb_006775_080 Hb_004012_010--Hb_004920_040 Hb_004012_010--Hb_003185_020 Hb_002762_060 Hb_002762_060 Hb_004012_010--Hb_002762_060 Hb_004920_040--Hb_002762_060 Hb_004920_040--Hb_024835_030 Hb_001138_050 Hb_001138_050 Hb_004920_040--Hb_001138_050 Hb_004920_040--Hb_006775_080 Hb_004221_010 Hb_004221_010 Hb_004920_040--Hb_004221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.235 87.9609 4.00699 13.2019 67.0152 73.4132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.311 130.318 94.7912 37.5746 6.38679

CAGE analysis